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The map label for this gene is (hspc4-1 [H]

Identifier: 78224406

GI number: 78224406

Start: 3614439

End: 3614891

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: Gmet_3215

Alternate gene names: 78224406

Gene position: 3614891-3614439 (Counterclockwise)

Preceding gene: 78224408

Following gene: 78224405

Centisome position: 90.43

GC content: 60.71

Gene sequence:

>453_bases
ATGGCCGTTATTCCCAAGGAGCCGCTTGACTGGCTCTCCCTCCTGCATCTGCAGATTGACGAGGTCTTCGACTACATCGC
CCGCATCGGCGGGGGGGAGCGTTGGGGCGAATGCGAGTATCTTCCGGCCATTGACATCTTCGAGACCCCGGACGAATTCA
CGGCGGAGTTTGAACTCCCCGGCTGCGACCGGGGCGACCTGTCACTCAAGCTATGCTCTAATACGCTGATTCTGGAAGGG
GTCAAGCGTGACGATACCCGTGACGGGGTGAGCTACCGTTGTCTGGAGCGGAGGTTCGGGCGCTTCTGTCGCGCCGTCGA
GGTTCCGCTCACGGTGGATATCGCCGCCGTCAGGGCCTCTTTTCGGCAGGGGGTCCTCACGGTCACCTTTCCCCGTCTCG
CGGATCGGGGGAAAATCATCCGCGAGATACCGATAGAACAAGGAGACGAGTAA

Upstream 100 bases:

>100_bases
AAAGATGATTAGATGATTAAACTGATGCACTGGACCTGAATTCAATTCCAGAGAGCGCGGATTTCTCCGTCCAGGTCTTT
CCGCACACAATGAGGGTGCT

Downstream 100 bases:

>100_bases
TGGAAGAAATTGAAGATAAAGAACCCCGGCAGGAGAACGAGGAACTGAAAATCCCCGATGTTTTGCCCCTGTTGCCGGTG
CGGGATGTGGTGGTCTACCC

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MAVIPKEPLDWLSLLHLQIDEVFDYIARIGGGERWGECEYLPAIDIFETPDEFTAEFELPGCDRGDLSLKLCSNTLILEG
VKRDDTRDGVSYRCLERRFGRFCRAVEVPLTVDIAAVRASFRQGVLTVTFPRLADRGKIIREIPIEQGDE

Sequences:

>Translated_150_residues
MAVIPKEPLDWLSLLHLQIDEVFDYIARIGGGERWGECEYLPAIDIFETPDEFTAEFELPGCDRGDLSLKLCSNTLILEG
VKRDDTRDGVSYRCLERRFGRFCRAVEVPLTVDIAAVRASFRQGVLTVTFPRLADRGKIIREIPIEQGDE
>Mature_149_residues
AVIPKEPLDWLSLLHLQIDEVFDYIARIGGGERWGECEYLPAIDIFETPDEFTAEFELPGCDRGDLSLKLCSNTLILEGV
KRDDTRDGVSYRCLERRFGRFCRAVEVPLTVDIAAVRASFRQGVLTVTFPRLADRGKIIREIPIEQGDE

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17033; Mature: 16901

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVIPKEPLDWLSLLHLQIDEVFDYIARIGGGERWGECEYLPAIDIFETPDEFTAEFELP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
GCDRGDLSLKLCSNTLILEGVKRDDTRDGVSYRCLERRFGRFCRAVEVPLTVDIAAVRAS
CCCCCCEEEEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHH
FRQGVLTVTFPRLADRGKIIREIPIEQGDE
HHCCEEEEECCCHHCCCCEEEECCCCCCCC
>Mature Secondary Structure 
AVIPKEPLDWLSLLHLQIDEVFDYIARIGGGERWGECEYLPAIDIFETPDEFTAEFELP
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
GCDRGDLSLKLCSNTLILEGVKRDDTRDGVSYRCLERRFGRFCRAVEVPLTVDIAAVRAS
CCCCCCEEEEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHH
FRQGVLTVTFPRLADRGKIIREIPIEQGDE
HHCCEEEEECCCHHCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA