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The map label for this gene is ihfA [H]

Identifier: 78224250

GI number: 78224250

Start: 3451422

End: 3451715

Strand: Direct

Name: ihfA [H]

Synonym: Gmet_3057

Alternate gene names: 78224250

Gene position: 3451422-3451715 (Clockwise)

Preceding gene: 78224244

Following gene: 78224263

Centisome position: 86.34

GC content: 47.28

Gene sequence:

>294_bases
ATGACGAAAGCCGATTTAGCCGACAAAATTCAGGAAAGGATCTCTTGCCAGAAGAAGGAAGCCGTTGAATTGGTGGAACT
CGTCATGGAATCGCTCAAGGATGCCATTGCGACCGAAGGACTTGTGAAGATCAGCGGTTTTGGAAATTTTGTCGTTCGGC
AGAAGACGGATAGAGCCGGAAGGAACCCGCAGACCGGGGAGACAATTACCATTTCATCTCGGAAGGTTCTGACGTTCAAA
CCAAGCGTGATCTTGAAAAATCGGATAAATTCCAGCTTGATGTCAAGTGACTGA

Upstream 100 bases:

>100_bases
TTATTTATGTTGTTACCAGGGTCAACCTTGCTTGCCGATGGCGGGTCAATCCACGATGCCGATTAACAATCCACTACCAA
TTCATGGAGAGGTCCGGGAG

Downstream 100 bases:

>100_bases
TAGCATTAGTCTCGTTGAACAAAGAACGGGGAAAGGTTTATCATTGCTTCCCGTGCCTTCATAATATCAGTCCCAACCTT
CCGTGAAAGAATTTCAACAA

Product: histone-like DNA-binding protein

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MTKADLADKIQERISCQKKEAVELVELVMESLKDAIATEGLVKISGFGNFVVRQKTDRAGRNPQTGETITISSRKVLTFK
PSVILKNRINSSLMSSD

Sequences:

>Translated_97_residues
MTKADLADKIQERISCQKKEAVELVELVMESLKDAIATEGLVKISGFGNFVVRQKTDRAGRNPQTGETITISSRKVLTFK
PSVILKNRINSSLMSSD
>Mature_96_residues
TKADLADKIQERISCQKKEAVELVELVMESLKDAIATEGLVKISGFGNFVVRQKTDRAGRNPQTGETITISSRKVLTFKP
SVILKNRINSSLMSSD

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=92, Percent_Identity=43.4782608695652, Blast_Score=90, Evalue=3e-20,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=35.5555555555556, Blast_Score=63, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10712; Mature: 10580

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKADLADKIQERISCQKKEAVELVELVMESLKDAIATEGLVKISGFGNFVVRQKTDRAG
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEECCCCCC
RNPQTGETITISSRKVLTFKPSVILKNRINSSLMSSD
CCCCCCCEEEECCCEEEEECCHHHHHHHHCCHHCCCC
>Mature Secondary Structure 
TKADLADKIQERISCQKKEAVELVELVMESLKDAIATEGLVKISGFGNFVVRQKTDRAG
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEECCCCCC
RNPQTGETITISSRKVLTFKPSVILKNRINSSLMSSD
CCCCCCCEEEECCCEEEEECCHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA