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The map label for this gene is xerC [H]

Identifier: 78224235

GI number: 78224235

Start: 3428975

End: 3429859

Strand: Direct

Name: xerC [H]

Synonym: Gmet_3042

Alternate gene names: 78224235

Gene position: 3428975-3429859 (Clockwise)

Preceding gene: 78224232

Following gene: 78224236

Centisome position: 85.78

GC content: 66.21

Gene sequence:

>885_bases
ATGGAACAGGAGATAGCAGCCTTCATCCGGCACCTGGAAACGGAGCGCAACGTCTCGCCCCACACCCTCGCCGCCTACCG
CTCGGACCTGGCCCAGTTCCGGGAGTTCGTCCGGCAGGAAACGGGAGCGGCGGCGGAACCGGAAGGGGTTTCGCACCTCC
TGATCCGGCGCTGGCTCGCGCTCCTGCACCGGGACCACACCAAAAGCTCCGTGGGGCGGAAGCTAGCGGCGGTGCGGGCC
TTTTTCAAGCACTTGATCCGGACCGGGCGCCTCGTCAAGAATCCCGCCGAGCTCGTCTCCACCCCCAAGAAGGAAAAGAA
GGTCCCCTATCACCTCTCCATCGACGAGGCGACCGCCCTGGTGGAAACCCCAAAGGAGCCGGACATCCTGAGCCTGCGGG
ACCGGGCCATCCTCGAAACCCTTTACTCCTGCGGCGTCCGGGTGTCTGAACTGACCGGCCTGAACATAGGGGGGATCGAC
CTGGATGACGGCACCGCGCGGGTTCTCGGCAAGGGGGGAAAGGAGCGGATCGTGCCGGTGGGAAGCATCGCCCGCGCCGC
CCTCTCCCACTACCTGACCGCCCGAAACCATCCCCCCCTCGACGCCCCCCTCTTCACCAATGCCCGGGGGGGACGCCTCA
CCCCCCGCAGTGTCCGGCGCGTGGTGGACAAGCATATCCTCCGGATCGCCGCCATGCGAAAGATTTCCCCCCACACCCTC
CGGCACACCTTCGCCACCCACCTGCTGGAAGGGGGAGCCGACCTGCGAGCCATCCAGGAGCTTCTGGGGCACGCCTCCCT
CTCCACGACCCAGAAGTACACCCATGTCGGCATCGACCGCCTCATGGAAGTCTACGACAAGGCCCACCCCAAGGCCCGGA
AATAA

Upstream 100 bases:

>100_bases
GGGAAACGAAAGAAGAATATCCTGTTTTCCTCTCGGAAACAACCGGGGTTCGGTTTAGGGAAAGAATCTGCTATGCTGTT
GGCAGCAAAAAGGAGTCCCC

Downstream 100 bases:

>100_bases
TTCCTTGTCATTTCATTAATTATCCCGTAGAGTGACCGACGACTGATCAACGCTCAGGCGGAACCTGCCTTCAGGCACAC
CCACGAAGTACTCCCGCCAT

Product: tyrosine recombinase XerD subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MEQEIAAFIRHLETERNVSPHTLAAYRSDLAQFREFVRQETGAAAEPEGVSHLLIRRWLALLHRDHTKSSVGRKLAAVRA
FFKHLIRTGRLVKNPAELVSTPKKEKKVPYHLSIDEATALVETPKEPDILSLRDRAILETLYSCGVRVSELTGLNIGGID
LDDGTARVLGKGGKERIVPVGSIARAALSHYLTARNHPPLDAPLFTNARGGRLTPRSVRRVVDKHILRIAAMRKISPHTL
RHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHPKARK

Sequences:

>Translated_294_residues
MEQEIAAFIRHLETERNVSPHTLAAYRSDLAQFREFVRQETGAAAEPEGVSHLLIRRWLALLHRDHTKSSVGRKLAAVRA
FFKHLIRTGRLVKNPAELVSTPKKEKKVPYHLSIDEATALVETPKEPDILSLRDRAILETLYSCGVRVSELTGLNIGGID
LDDGTARVLGKGGKERIVPVGSIARAALSHYLTARNHPPLDAPLFTNARGGRLTPRSVRRVVDKHILRIAAMRKISPHTL
RHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHPKARK
>Mature_294_residues
MEQEIAAFIRHLETERNVSPHTLAAYRSDLAQFREFVRQETGAAAEPEGVSHLLIRRWLALLHRDHTKSSVGRKLAAVRA
FFKHLIRTGRLVKNPAELVSTPKKEKKVPYHLSIDEATALVETPKEPDILSLRDRAILETLYSCGVRVSELTGLNIGGID
LDDGTARVLGKGGKERIVPVGSIARAALSHYLTARNHPPLDAPLFTNARGGRLTPRSVRRVVDKHILRIAAMRKISPHTL
RHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHPKARK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=296, Percent_Identity=37.1621621621622, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789261, Length=304, Percent_Identity=39.8026315789474, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1790768, Length=159, Percent_Identity=28.9308176100629, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32760; Mature: 32760

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQEIAAFIRHLETERNVSPHTLAAYRSDLAQFREFVRQETGAAAEPEGVSHLLIRRWLA
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LLHRDHTKSSVGRKLAAVRAFFKHLIRTGRLVKNPAELVSTPKKEKKVPYHLSIDEATAL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHCCCHHHCCCCEEEEHHHHHHH
VETPKEPDILSLRDRAILETLYSCGVRVSELTGLNIGGIDLDDGTARVLGKGGKERIVPV
HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEECCCCHHHHHCCCCCCCCCCH
GSIARAALSHYLTARNHPPLDAPLFTNARGGRLTPRSVRRVVDKHILRIAAMRKISPHTL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
RHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHPKARK
HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEQEIAAFIRHLETERNVSPHTLAAYRSDLAQFREFVRQETGAAAEPEGVSHLLIRRWLA
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LLHRDHTKSSVGRKLAAVRAFFKHLIRTGRLVKNPAELVSTPKKEKKVPYHLSIDEATAL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHCCCHHHCCCCEEEEHHHHHHH
VETPKEPDILSLRDRAILETLYSCGVRVSELTGLNIGGIDLDDGTARVLGKGGKERIVPV
HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEECCCCHHHHHCCCCCCCCCCH
GSIARAALSHYLTARNHPPLDAPLFTNARGGRLTPRSVRRVVDKHILRIAAMRKISPHTL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
RHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHPKARK
HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA