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The map label for this gene is ydaM [H]

Identifier: 78224175

GI number: 78224175

Start: 3368491

End: 3369519

Strand: Reverse

Name: ydaM [H]

Synonym: Gmet_2982

Alternate gene names: 78224175

Gene position: 3369519-3368491 (Counterclockwise)

Preceding gene: 78224176

Following gene: 78224174

Centisome position: 84.29

GC content: 64.53

Gene sequence:

>1029_bases
GTGGGGTGTGACATTTTGCAGGAGATCCTTGACTCGTGCCTGTCCCTGGAGAAAAAGGCCGCGGCCATCTTCAGGGCCTT
TGCCGCCCATGCCGTCCGGGACGATGCCCGGAGCTTCTGGGAAGCCGTGGCCGCTGAAACCAACCACCACAGCGCTCTCT
ACGAGCGCCTCAACACCCCCATCTCCGAGGGAGGGGCCGCTCCCCTCGTTATCTACAAGCCGGCCGAGACCCGGGAAGAG
CTGGAGATGATCGGGCGGAACATCGACGAGCAGTTCGAGCTCTACCAGGCGGCGCCCACTCCCGAGGCCGCCTGTCTCCT
TGGTTTCCGGCTCCAGCTCTATCTCCTTCACCCTGCCTTTGCCAGCCTCTGCCGCATGACCAAGGATGTCACCGGCGAGG
ATGCCAACGACCTGGGCTACGGTAGGTATCTGCGCCGGTTCATCGACGGGATCGGCATCTGCGGCATGGCCACGGCCGAA
TCGGAACTTCTCGGAGAGGCCCTCTTCCGCCTCTGGAACGAGGCGCGGCAGCTGGCAGTCCAGTCCCATACCGATGCCCT
GACCGGGGTCCTCACCCGGGCCGGCTTCTTCCAGGCCGTCTCCCCCTTGGCCTACGCGGCCCAGCGTAACGGGAACAACG
CGGCCATCATGCTCATCGACATCGACTACTTCAAGCTTCTGGGGGAAAATTACGGTCACCAGACCGGCGACCGGGTGCTC
CAGGTGGTGGCCGACACCATCACGTCGCACCTGCGGCGCTCCGACGTGGTGGGGCGGTACGACGGGGACGAGTTCATCGT
CTACCTCTCGCCGGTGGAGCCGGCCTCCCTCAAGTCCGTGGCCGAGAACCTCAGGGTCCAGGTGGAGGAGGCGACTGCCC
GGATCGTCCCGGTCACCATCAGCATCGGTGTGGCCCAGGGGACTTTCGGCCCCGACGTGGACCATTCCCTCGAAGAGCTG
GTCCGCAAGGCCGACGAGTGCCAGATGCAGGCCAAGTACACCGGCAAGAACAAGGTCGTCATGAAGTAA

Upstream 100 bases:

>100_bases
AATAACTGCGTGGAATTGCGGGCGTCTTTCGTGATAGTGTTTACAACCTTGTACTGAGGAAAACCCGGTCCCTGCCCATG
GGTGGGGAGAGGAGGCGGCT

Downstream 100 bases:

>100_bases
CTTCCTGCGGGCCAGGTCCTGCGGCTTACCGGACTGCCCGTGGCGAAACCTCAATCTATCTCCCGCTTGCGTTGGCCTGA
AACGGGGGCATACTTCCCTA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MGCDILQEILDSCLSLEKKAAAIFRAFAAHAVRDDARSFWEAVAAETNHHSALYERLNTPISEGGAAPLVIYKPAETREE
LEMIGRNIDEQFELYQAAPTPEAACLLGFRLQLYLLHPAFASLCRMTKDVTGEDANDLGYGRYLRRFIDGIGICGMATAE
SELLGEALFRLWNEARQLAVQSHTDALTGVLTRAGFFQAVSPLAYAAQRNGNNAAIMLIDIDYFKLLGENYGHQTGDRVL
QVVADTITSHLRRSDVVGRYDGDEFIVYLSPVEPASLKSVAENLRVQVEEATARIVPVTISIGVAQGTFGPDVDHSLEEL
VRKADECQMQAKYTGKNKVVMK

Sequences:

>Translated_342_residues
MGCDILQEILDSCLSLEKKAAAIFRAFAAHAVRDDARSFWEAVAAETNHHSALYERLNTPISEGGAAPLVIYKPAETREE
LEMIGRNIDEQFELYQAAPTPEAACLLGFRLQLYLLHPAFASLCRMTKDVTGEDANDLGYGRYLRRFIDGIGICGMATAE
SELLGEALFRLWNEARQLAVQSHTDALTGVLTRAGFFQAVSPLAYAAQRNGNNAAIMLIDIDYFKLLGENYGHQTGDRVL
QVVADTITSHLRRSDVVGRYDGDEFIVYLSPVEPASLKSVAENLRVQVEEATARIVPVTISIGVAQGTFGPDVDHSLEEL
VRKADECQMQAKYTGKNKVVMK
>Mature_341_residues
GCDILQEILDSCLSLEKKAAAIFRAFAAHAVRDDARSFWEAVAAETNHHSALYERLNTPISEGGAAPLVIYKPAETREEL
EMIGRNIDEQFELYQAAPTPEAACLLGFRLQLYLLHPAFASLCRMTKDVTGEDANDLGYGRYLRRFIDGIGICGMATAES
ELLGEALFRLWNEARQLAVQSHTDALTGVLTRAGFFQAVSPLAYAAQRNGNNAAIMLIDIDYFKLLGENYGHQTGDRVLQ
VVADTITSHLRRSDVVGRYDGDEFIVYLSPVEPASLKSVAENLRVQVEEATARIVPVTISIGVAQGTFGPDVDHSLEELV
RKADECQMQAKYTGKNKVVMK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=34.5454545454545, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=34.1317365269461, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=33.5294117647059, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=34.7826086956522, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=32.7380952380952, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788085, Length=182, Percent_Identity=31.8681318681319, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI87081977, Length=124, Percent_Identity=34.6774193548387, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=30, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=28.3132530120482, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081974, Length=158, Percent_Identity=25.9493670886076, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 37675; Mature: 37544

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCDILQEILDSCLSLEKKAAAIFRAFAAHAVRDDARSFWEAVAAETNHHSALYERLNTP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
ISEGGAAPLVIYKPAETREELEMIGRNIDEQFELYQAAPTPEAACLLGFRLQLYLLHPAF
CCCCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ASLCRMTKDVTGEDANDLGYGRYLRRFIDGIGICGMATAESELLGEALFRLWNEARQLAV
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QSHTDALTGVLTRAGFFQAVSPLAYAAQRNGNNAAIMLIDIDYFKLLGENYGHQTGDRVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHH
QVVADTITSHLRRSDVVGRYDGDEFIVYLSPVEPASLKSVAENLRVQVEEATARIVPVTI
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHEEEECCCEEEEEEEE
SIGVAQGTFGPDVDHSLEELVRKADECQMQAKYTGKNKVVMK
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCEEEC
>Mature Secondary Structure 
GCDILQEILDSCLSLEKKAAAIFRAFAAHAVRDDARSFWEAVAAETNHHSALYERLNTP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
ISEGGAAPLVIYKPAETREELEMIGRNIDEQFELYQAAPTPEAACLLGFRLQLYLLHPAF
CCCCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ASLCRMTKDVTGEDANDLGYGRYLRRFIDGIGICGMATAESELLGEALFRLWNEARQLAV
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QSHTDALTGVLTRAGFFQAVSPLAYAAQRNGNNAAIMLIDIDYFKLLGENYGHQTGDRVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHH
QVVADTITSHLRRSDVVGRYDGDEFIVYLSPVEPASLKSVAENLRVQVEEATARIVPVTI
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHEEEECCCEEEEEEEE
SIGVAQGTFGPDVDHSLEELVRKADECQMQAKYTGKNKVVMK
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]