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The map label for this gene is bphB [H]

Identifier: 78224007

GI number: 78224007

Start: 3177061

End: 3179277

Strand: Reverse

Name: bphB [H]

Synonym: Gmet_2811

Alternate gene names: 78224007

Gene position: 3179277-3177061 (Counterclockwise)

Preceding gene: 78224008

Following gene: 78224003

Centisome position: 79.53

GC content: 61.57

Gene sequence:

>2217_bases
GTGACACAACTCAGTCTCAAGACCCGCATGGCAGTTGGAGTCGCCCTCCTGTTCCTCTGTTTCGGTTCGGTGACCGGATT
TTTCGCCCTCACCTACTTCCAGCAGAAATTCAAGGAGAGCATCTCCACCCACCAGGAGGCGCTCCTCTCGTCCCTTGCCG
ATGACCTGGACAGCAAAATCCTCTTCGCCCAGAAATCCCTGGAGGCGTTTGCCCCCAAACTGACGGAGAATGTGCTTCGG
AATGAGGGGAAACTCCAGCAGGCCCTTGACGACAAGACCACCCTCCATCTCCTCTTCGATGCCCTGATCGTATTCTCCCC
CGAGGGGAAGCTCCTCACCGAAAGCCCCCAAAAGCTCGAGATCCGGGGACGTGATTATTCCTTCCGGGACTATTTCAAAA
AGACCGTCGCGACCGGAAAGCCCCAGATCAGCACCCCGTTTGTTTCCACCTATGCCCCGGGCCATCCGGCGGTCATGCTG
ACGTTCCCGCTTTTTGACGCCAAAGGGCGCATGACCGCCATCCTGGCCGGCCATGTGGATCTGCTGGGAGAGAACTTCCT
GACGGACCTGGGCCGACTGACCATCGGCAAGAGCGGCTATGCGGTAGTGATCGACGGCAACAGGACACGGCTCATACACC
CGGACAGGTCGCGCATCATGACGCCGGTTCCGGTAGGGCTCAATCCGCTCTTCGACCGGGCCATGGCCGGATTTGACGGG
AGCGGCGAAACGGTGAACGCCAGAGGGGTTCAGGTCCTTGCCTCTTACAAACACCTTCGCTCCGTCAACTGGATTCTGGG
GACCGTCTATCCCCTCGATGAGGCGTATGCGTCCCTCTACCGGGCGCGGGGGTATTTTGTGAGCGCCATGGTGCTGGGGC
TCGTCCTGATGCTCCTGGTGAGCTGGTATGCCATGCAGCGGCTGATTTCACCCCTCTCGCACCTGACCGGCCATATCAAG
GCAATGGCTGCCGAACCCGAGGCGGGGGGGCGGACGGTGCCGGTGGAGTCAAACGACGAGATCGGCACCCTTGCCACCGC
CTTCAACACCATGATGGGCGCCCTCAGGGAAAAGCAGGAGTCGCTGCGGAGAGCTGTTGCACGGGCGGAGGACGAGCGGG
AGAAGTCTGATGCCATCATTGCTGCCATTGGGGAGGGGATCAGCATCCAGGACCGGAACTTCCGCATACTGTACCAGAAC
GAGGAACACCGGAAGATTACCGGCGGCAACCACGTGGGTAAATTCTGCTACGAGGCCTACCGTCATAACGACCATGTTTG
CGATGACTGTCCCGTGGCCCAATGCTTCGCCGACGACAAGGTTCACATGCGGGAAAACCGGAACACTTCGGGGGGGGGGG
CGGAGTATGTGGCAATTTCCGCGTCGCCGCTGCGGGATGCCACTGGCGAGATTGTTGCCGGCATCGAGCTGGTGAGGGAT
ATCACCGAGCGGAAGCGGACGGAGCAACAGATCCGGACCCTCAATGCCGAGCTTGAGCAGCGGGTCAGAGAGCGGACCGA
GGAGCTGGAGCAATCCCTGCGGGAGATGGAAACCTTTTGCTATACGGTGTCCCATGACCTCCGCACCCCCCTCAGGGGAA
TCCATGGGTTCAGCTCCATTCTCCAGCAGGATTACGCCGAACGGCTTGACCAGGAGGGGAAAGAATACCTCCAGCGGATC
GGCGGTGCCGCCAACCGCATGGGGGAGCTGATCGACGACCTGTTGGAGCTCTCCCGTGTCAACCGGGACGAGCTGAGGCG
GGTTCCGGTGGATCTGACCACCCTGGCCGGGGAGATCGCCGACGACCTCACCCGGAGCCAGCCGGAGCGGAAGGTGGAGT
TCGTCATCGCGCCGGGACTCCGGGCCACGGGCGATCCGTCACTGCTGGGGGCGGTCCTGGCAAACATCATCCATAACGCA
TGGAAGTTCAGCTCCCGCAATCCCGCTGCCCGCATCGAGGTGGGCTCCCGCACTGACGGGGAGGAACAGGCCTTCTACGT
GAGGGACAACGGGGTGGGGTTCGACATGCAGTACGCAGACAAGCTCTTCCTTCCCTTCCATCGTCTCCACGCGGCCGAGG
GATTCGAGGGGACCGGCATCGGCCTCGCCACGGTCCAGCGGATCATCGAGCGGCACGGCGGCCGGGTCTGGGCCGAGAGC
GCACCGGGGAAGGGGGCAACGTTCTTCTTCACCGTCCAAGATGAAAAAAATACTTGA

Upstream 100 bases:

>100_bases
TGGGGGCCCAGCAGGGGATACCCCGTCTCCCCGACGTGTTGGAATTCCTGACGCGGAGAACTATAACGGTGCTTTCGAAC
CCACAGACAGAGGTCAGTCC

Downstream 100 bases:

>100_bases
AACACGGAGCAACCGTGTTCTCAGTCAACAAATTAGTGCAGAAGTGGAGTGAATTTCGAGTGATCCCACTTCTGGTTGTT
TTTCACCATGGCATTGAGGA

Product: PAS/PAC sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 738; Mature: 737

Protein sequence:

>738_residues
MTQLSLKTRMAVGVALLFLCFGSVTGFFALTYFQQKFKESISTHQEALLSSLADDLDSKILFAQKSLEAFAPKLTENVLR
NEGKLQQALDDKTTLHLLFDALIVFSPEGKLLTESPQKLEIRGRDYSFRDYFKKTVATGKPQISTPFVSTYAPGHPAVML
TFPLFDAKGRMTAILAGHVDLLGENFLTDLGRLTIGKSGYAVVIDGNRTRLIHPDRSRIMTPVPVGLNPLFDRAMAGFDG
SGETVNARGVQVLASYKHLRSVNWILGTVYPLDEAYASLYRARGYFVSAMVLGLVLMLLVSWYAMQRLISPLSHLTGHIK
AMAAEPEAGGRTVPVESNDEIGTLATAFNTMMGALREKQESLRRAVARAEDEREKSDAIIAAIGEGISIQDRNFRILYQN
EEHRKITGGNHVGKFCYEAYRHNDHVCDDCPVAQCFADDKVHMRENRNTSGGGAEYVAISASPLRDATGEIVAGIELVRD
ITERKRTEQQIRTLNAELEQRVRERTEELEQSLREMETFCYTVSHDLRTPLRGIHGFSSILQQDYAERLDQEGKEYLQRI
GGAANRMGELIDDLLELSRVNRDELRRVPVDLTTLAGEIADDLTRSQPERKVEFVIAPGLRATGDPSLLGAVLANIIHNA
WKFSSRNPAARIEVGSRTDGEEQAFYVRDNGVGFDMQYADKLFLPFHRLHAAEGFEGTGIGLATVQRIIERHGGRVWAES
APGKGATFFFTVQDEKNT

Sequences:

>Translated_738_residues
MTQLSLKTRMAVGVALLFLCFGSVTGFFALTYFQQKFKESISTHQEALLSSLADDLDSKILFAQKSLEAFAPKLTENVLR
NEGKLQQALDDKTTLHLLFDALIVFSPEGKLLTESPQKLEIRGRDYSFRDYFKKTVATGKPQISTPFVSTYAPGHPAVML
TFPLFDAKGRMTAILAGHVDLLGENFLTDLGRLTIGKSGYAVVIDGNRTRLIHPDRSRIMTPVPVGLNPLFDRAMAGFDG
SGETVNARGVQVLASYKHLRSVNWILGTVYPLDEAYASLYRARGYFVSAMVLGLVLMLLVSWYAMQRLISPLSHLTGHIK
AMAAEPEAGGRTVPVESNDEIGTLATAFNTMMGALREKQESLRRAVARAEDEREKSDAIIAAIGEGISIQDRNFRILYQN
EEHRKITGGNHVGKFCYEAYRHNDHVCDDCPVAQCFADDKVHMRENRNTSGGGAEYVAISASPLRDATGEIVAGIELVRD
ITERKRTEQQIRTLNAELEQRVRERTEELEQSLREMETFCYTVSHDLRTPLRGIHGFSSILQQDYAERLDQEGKEYLQRI
GGAANRMGELIDDLLELSRVNRDELRRVPVDLTTLAGEIADDLTRSQPERKVEFVIAPGLRATGDPSLLGAVLANIIHNA
WKFSSRNPAARIEVGSRTDGEEQAFYVRDNGVGFDMQYADKLFLPFHRLHAAEGFEGTGIGLATVQRIIERHGGRVWAES
APGKGATFFFTVQDEKNT
>Mature_737_residues
TQLSLKTRMAVGVALLFLCFGSVTGFFALTYFQQKFKESISTHQEALLSSLADDLDSKILFAQKSLEAFAPKLTENVLRN
EGKLQQALDDKTTLHLLFDALIVFSPEGKLLTESPQKLEIRGRDYSFRDYFKKTVATGKPQISTPFVSTYAPGHPAVMLT
FPLFDAKGRMTAILAGHVDLLGENFLTDLGRLTIGKSGYAVVIDGNRTRLIHPDRSRIMTPVPVGLNPLFDRAMAGFDGS
GETVNARGVQVLASYKHLRSVNWILGTVYPLDEAYASLYRARGYFVSAMVLGLVLMLLVSWYAMQRLISPLSHLTGHIKA
MAAEPEAGGRTVPVESNDEIGTLATAFNTMMGALREKQESLRRAVARAEDEREKSDAIIAAIGEGISIQDRNFRILYQNE
EHRKITGGNHVGKFCYEAYRHNDHVCDDCPVAQCFADDKVHMRENRNTSGGGAEYVAISASPLRDATGEIVAGIELVRDI
TERKRTEQQIRTLNAELEQRVRERTEELEQSLREMETFCYTVSHDLRTPLRGIHGFSSILQQDYAERLDQEGKEYLQRIG
GAANRMGELIDDLLELSRVNRDELRRVPVDLTTLAGEIADDLTRSQPERKVEFVIAPGLRATGDPSLLGAVLANIIHNAW
KFSSRNPAARIEVGSRTDGEEQAFYVRDNGVGFDMQYADKLFLPFHRLHAAEGFEGTGIGLATVQRIIERHGGRVWAESA
PGKGATFFFTVQDEKNT

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=285, Percent_Identity=31.5789473684211, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788549, Length=410, Percent_Identity=27.5609756097561, Blast_Score=113, Evalue=5e-26,
Organism=Escherichia coli, GI145693157, Length=243, Percent_Identity=27.9835390946502, Blast_Score=99, Evalue=9e-22,
Organism=Escherichia coli, GI1789149, Length=267, Percent_Identity=26.5917602996255, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1790346, Length=271, Percent_Identity=30.2583025830258, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87081816, Length=261, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1790436, Length=213, Percent_Identity=31.4553990610329, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786600, Length=225, Percent_Identity=28.4444444444444, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1790861, Length=203, Percent_Identity=26.6009852216749, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1789808, Length=196, Percent_Identity=30.6122448979592, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786783, Length=252, Percent_Identity=25.3968253968254, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788393, Length=240, Percent_Identity=27.0833333333333, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1786912, Length=254, Percent_Identity=26.7716535433071, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI1788713, Length=267, Percent_Identity=23.5955056179775, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 82114; Mature: 81983

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: PS50885 HAMP ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLSLKTRMAVGVALLFLCFGSVTGFFALTYFQQKFKESISTHQEALLSSLADDLDSKI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFAQKSLEAFAPKLTENVLRNEGKLQQALDDKTTLHLLFDALIVFSPEGKLLTESPQKLE
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCEECCCCCEEE
IRGRDYSFRDYFKKTVATGKPQISTPFVSTYAPGHPAVMLTFPLFDAKGRMTAILAGHVD
ECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEHHHHH
LLGENFLTDLGRLTIGKSGYAVVIDGNRTRLIHPDRSRIMTPVPVGLNPLFDRAMAGFDG
HHHHHHHHHHHHHEECCCCCEEEEECCCEEEECCCHHCCCCCCCCCCCHHHHHHHCCCCC
SGETVNARGVQVLASYKHLRSVNWILGTVYPLDEAYASLYRARGYFVSAMVLGLVLMLLV
CCCEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SWYAMQRLISPLSHLTGHIKAMAAEPEAGGRTVPVESNDEIGTLATAFNTMMGALREKQE
HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SLRRAVARAEDEREKSDAIIAAIGEGISIQDRNFRILYQNEEHRKITGGNHVGKFCYEAY
HHHHHHHHHHHHHHHHCEEEEEECCCCEEECCCEEEEEECCCCCEECCCCHHHHHHHHHH
RHNDHVCDDCPVAQCFADDKVHMRENRNTSGGGAEYVAISASPLRDATGEIVAGIELVRD
HCCCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
ITERKRTEQQIRTLNAELEQRVRERTEELEQSLREMETFCYTVSHDLRTPLRGIHGFSSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQQDYAERLDQEGKEYLQRIGGAANRMGELIDDLLELSRVNRDELRRVPVDLTTLAGEIA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHH
DDLTRSQPERKVEFVIAPGLRATGDPSLLGAVLANIIHNAWKFSSRNPAARIEVGSRTDG
HHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
EEQAFYVRDNGVGFDMQYADKLFLPFHRLHAAEGFEGTGIGLATVQRIIERHGGRVWAES
CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEECC
APGKGATFFFTVQDEKNT
CCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
TQLSLKTRMAVGVALLFLCFGSVTGFFALTYFQQKFKESISTHQEALLSSLADDLDSKI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFAQKSLEAFAPKLTENVLRNEGKLQQALDDKTTLHLLFDALIVFSPEGKLLTESPQKLE
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCEECCCCCEEE
IRGRDYSFRDYFKKTVATGKPQISTPFVSTYAPGHPAVMLTFPLFDAKGRMTAILAGHVD
ECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEHHHHH
LLGENFLTDLGRLTIGKSGYAVVIDGNRTRLIHPDRSRIMTPVPVGLNPLFDRAMAGFDG
HHHHHHHHHHHHHEECCCCCEEEEECCCEEEECCCHHCCCCCCCCCCCHHHHHHHCCCCC
SGETVNARGVQVLASYKHLRSVNWILGTVYPLDEAYASLYRARGYFVSAMVLGLVLMLLV
CCCEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SWYAMQRLISPLSHLTGHIKAMAAEPEAGGRTVPVESNDEIGTLATAFNTMMGALREKQE
HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SLRRAVARAEDEREKSDAIIAAIGEGISIQDRNFRILYQNEEHRKITGGNHVGKFCYEAY
HHHHHHHHHHHHHHHHCEEEEEECCCCEEECCCEEEEEECCCCCEECCCCHHHHHHHHHH
RHNDHVCDDCPVAQCFADDKVHMRENRNTSGGGAEYVAISASPLRDATGEIVAGIELVRD
HCCCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
ITERKRTEQQIRTLNAELEQRVRERTEELEQSLREMETFCYTVSHDLRTPLRGIHGFSSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQQDYAERLDQEGKEYLQRIGGAANRMGELIDDLLELSRVNRDELRRVPVDLTTLAGEIA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHH
DDLTRSQPERKVEFVIAPGLRATGDPSLLGAVLANIIHNAWKFSSRNPAARIEVGSRTDG
HHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
EEQAFYVRDNGVGFDMQYADKLFLPFHRLHAAEGFEGTGIGLATVQRIIERHGGRVWAES
CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEECC
APGKGATFFFTVQDEKNT
CCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]