Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 78223966

GI number: 78223966

Start: 3133504

End: 3134760

Strand: Reverse

Name: bphB [H]

Synonym: Gmet_2770

Alternate gene names: 78223966

Gene position: 3134760-3133504 (Counterclockwise)

Preceding gene: 78223967

Following gene: 78223965

Centisome position: 78.42

GC content: 59.43

Gene sequence:

>1257_bases
ATGGCTATCTGCCGGAATGAGGTGAGGATGAGGGGAGACAAGCGGGGAAAGATAGCGATAGCAAAGCAGATGGCGAACAG
GCTCTACCCCCTCGCCCTGGCGATCGCGCTCCTCATCGGCATCGGTTTCCCGGCGGTCTATGCCATTCTCGCAGCCGAAG
TGCAGATGAATACCGCGACGTGCCACGCCGGTGAGCTAGCGGAGCGGCTCGGGAAAATGGCCCGCGAGGATATCACCCTC
TGGAAGTTCCAGAACCAGAAGTATGCCGCTGTCCTTGACGATTTCCTCCCCCGGAAAAACATCATGCATGTCAGAATTCT
CGATGAATCGGGAAAAGCACTGACGATATTCGATCGTGTTGAAGCCCACGGAATACCGATTTTCAGACCCTTGGCCCTCA
GCAGCGAGGCTCCCATCGTATTTAACCGGCAAACCATCGGGACCGTTGTCATCGAAACGGCGTCGGACCGGCTGATCCTT
TCCACCTTTGCCGTTTTTCTCTTTTTCGCCGTTGTCGGCTTGGTCCTGGCGGTCTCCGTCTACCACTATCCCACCAGGGT
GGCAAAGGGGCTCGAAGGGGAGATCGGGGGGCTCATAGCCGAGCTGGAATCCTTCAGCTACACGGTGTCCCACGATCTCC
ACGCGCCGTTGCGCCATATCAGCGGTTACAGCGGCATTCTCCTTGAAGACCACGGCGATAGGCTCGGGCCGGATGTTCGG
GAGATGTTGTCCCGCATCCACGGTTCCAGCGAGAGGATGAAGGAGATCGTCGATTCCCTCCTGGAGCTGTCGCGTATCGG
CCGGACCGAGCTCAAGCGGGAACGGGTCAATCTCGGAACCATTGCCCATGACATCACGGAGAGACTCAAGCTCTCGGGGG
CGGGGCGTCAGGCAACCTTTCGCATTCAGGACAATGTGGTGGTTGAGGGAGACCCGCACCTCCTGCGGAACGTGCTGGAA
AACCTCCTCGGCAACGCCTGGAAGTTCACCGCCAAAAGGGACATTGCCGTCATCGAGTTCGGGACGGTGGAGGTTGACGG
AAGTGAAGCCTGCTTTGTCCGGGACAACGGCGCCGGCTTCGACATGGCTTACGCCGACAAGCTCTTCGCGCCGTTCCAGC
GACTTCACAGCGCCGCTGAATTCGAGGGCTCCGGCATCGGCCTCGCCACGGTACGGCGCATCATCAACCATCACGGGGGA
AATCTCTGGGCTGAAGGAACGCCCGGCGAGGGCGCGGCATTCTACTTCTCGCTCTGA

Upstream 100 bases:

>100_bases
ACCCTTGCCTTTGTCCATCGGCCGGGAACGCTTTCCCGGACCGGCACGTCGTTTCTTCGCTTCGTTTTTTCCGGCAGGGG
AAGAAAAATACTGAAAACGC

Downstream 100 bases:

>100_bases
TCCCCGCCCGCCACGGCAATCCCCTCCATTTGAAACCCCACCCCCCTCTGCTATACTTTCGGCGTTATCCCGTCGAAAGG
ACGCACCAATGACCATTCTC

Product: histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MAICRNEVRMRGDKRGKIAIAKQMANRLYPLALAIALLIGIGFPAVYAILAAEVQMNTATCHAGELAERLGKMAREDITL
WKFQNQKYAAVLDDFLPRKNIMHVRILDESGKALTIFDRVEAHGIPIFRPLALSSEAPIVFNRQTIGTVVIETASDRLIL
STFAVFLFFAVVGLVLAVSVYHYPTRVAKGLEGEIGGLIAELESFSYTVSHDLHAPLRHISGYSGILLEDHGDRLGPDVR
EMLSRIHGSSERMKEIVDSLLELSRIGRTELKRERVNLGTIAHDITERLKLSGAGRQATFRIQDNVVVEGDPHLLRNVLE
NLLGNAWKFTAKRDIAVIEFGTVEVDGSEACFVRDNGAGFDMAYADKLFAPFQRLHSAAEFEGSGIGLATVRRIINHHGG
NLWAEGTPGEGAAFYFSL

Sequences:

>Translated_418_residues
MAICRNEVRMRGDKRGKIAIAKQMANRLYPLALAIALLIGIGFPAVYAILAAEVQMNTATCHAGELAERLGKMAREDITL
WKFQNQKYAAVLDDFLPRKNIMHVRILDESGKALTIFDRVEAHGIPIFRPLALSSEAPIVFNRQTIGTVVIETASDRLIL
STFAVFLFFAVVGLVLAVSVYHYPTRVAKGLEGEIGGLIAELESFSYTVSHDLHAPLRHISGYSGILLEDHGDRLGPDVR
EMLSRIHGSSERMKEIVDSLLELSRIGRTELKRERVNLGTIAHDITERLKLSGAGRQATFRIQDNVVVEGDPHLLRNVLE
NLLGNAWKFTAKRDIAVIEFGTVEVDGSEACFVRDNGAGFDMAYADKLFAPFQRLHSAAEFEGSGIGLATVRRIINHHGG
NLWAEGTPGEGAAFYFSL
>Mature_417_residues
AICRNEVRMRGDKRGKIAIAKQMANRLYPLALAIALLIGIGFPAVYAILAAEVQMNTATCHAGELAERLGKMAREDITLW
KFQNQKYAAVLDDFLPRKNIMHVRILDESGKALTIFDRVEAHGIPIFRPLALSSEAPIVFNRQTIGTVVIETASDRLILS
TFAVFLFFAVVGLVLAVSVYHYPTRVAKGLEGEIGGLIAELESFSYTVSHDLHAPLRHISGYSGILLEDHGDRLGPDVRE
MLSRIHGSSERMKEIVDSLLELSRIGRTELKRERVNLGTIAHDITERLKLSGAGRQATFRIQDNVVVEGDPHLLRNVLEN
LLGNAWKFTAKRDIAVIEFGTVEVDGSEACFVRDNGAGFDMAYADKLFAPFQRLHSAAEFEGSGIGLATVRRIINHHGGN
LWAEGTPGEGAAFYFSL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=223, Percent_Identity=29.5964125560538, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI145693157, Length=219, Percent_Identity=30.5936073059361, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1786600, Length=219, Percent_Identity=32.4200913242009, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789149, Length=224, Percent_Identity=27.2321428571429, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI48994928, Length=229, Percent_Identity=27.0742358078603, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786912, Length=296, Percent_Identity=28.3783783783784, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788713, Length=224, Percent_Identity=24.1071428571429, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790436, Length=218, Percent_Identity=26.605504587156, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786783, Length=220, Percent_Identity=26.8181818181818, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790861, Length=207, Percent_Identity=28.0193236714976, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081816, Length=226, Percent_Identity=28.3185840707965, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI1790346, Length=207, Percent_Identity=26.5700483091787, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 46090; Mature: 45959

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAICRNEVRMRGDKRGKIAIAKQMANRLYPLALAIALLIGIGFPAVYAILAAEVQMNTAT
CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECCCC
CHAGELAERLGKMAREDITLWKFQNQKYAAVLDDFLPRKNIMHVRILDESGKALTIFDRV
CCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEHH
EAHGIPIFRPLALSSEAPIVFNRQTIGTVVIETASDRLILSTFAVFLFFAVVGLVLAVSV
HHCCCCEEEEEECCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
YHYPTRVAKGLEGEIGGLIAELESFSYTVSHDLHAPLRHISGYSGILLEDHGDRLGPDVR
HHHHHHHHCCCCCHHHHHHHHHHHCEEEECCCHHHHHHHCCCCCCEEEECCCCCCCHHHH
EMLSRIHGSSERMKEIVDSLLELSRIGRTELKRERVNLGTIAHDITERLKLSGAGRQATF
HHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
RIQDNVVVEGDPHLLRNVLENLLGNAWKFTAKRDIAVIEFGTVEVDGSEACFVRDNGAGF
EEECCEEECCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEEEECCCCEEEEECCCCCC
DMAYADKLFAPFQRLHSAAEFEGSGIGLATVRRIINHHGGNLWAEGTPGEGAAFYFSL
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCEEEEEC
>Mature Secondary Structure 
AICRNEVRMRGDKRGKIAIAKQMANRLYPLALAIALLIGIGFPAVYAILAAEVQMNTAT
CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECCCC
CHAGELAERLGKMAREDITLWKFQNQKYAAVLDDFLPRKNIMHVRILDESGKALTIFDRV
CCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEHH
EAHGIPIFRPLALSSEAPIVFNRQTIGTVVIETASDRLILSTFAVFLFFAVVGLVLAVSV
HHCCCCEEEEEECCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
YHYPTRVAKGLEGEIGGLIAELESFSYTVSHDLHAPLRHISGYSGILLEDHGDRLGPDVR
HHHHHHHHCCCCCHHHHHHHHHHHCEEEECCCHHHHHHHCCCCCCEEEECCCCCCCHHHH
EMLSRIHGSSERMKEIVDSLLELSRIGRTELKRERVNLGTIAHDITERLKLSGAGRQATF
HHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
RIQDNVVVEGDPHLLRNVLENLLGNAWKFTAKRDIAVIEFGTVEVDGSEACFVRDNGAGF
EEECCEEECCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEEEECCCCEEEEECCCCCC
DMAYADKLFAPFQRLHSAAEFEGSGIGLATVRRIINHHGGNLWAEGTPGEGAAFYFSL
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]