Click here to switch to the map view.

The map label for this gene is ypfJ [H]

Identifier: 78223922

GI number: 78223922

Start: 3080906

End: 3081760

Strand: Reverse

Name: ypfJ [H]

Synonym: Gmet_2726

Alternate gene names: 78223922

Gene position: 3081760-3080906 (Counterclockwise)

Preceding gene: 78223923

Following gene: 78223921

Centisome position: 77.09

GC content: 66.67

Gene sequence:

>855_bases
ATGCGATGGAGTGACGGACGGAGAAGCGACAACGTGGAAGACCGCCGGGGGATGACCGTTGGCCGGAAGGCGGTGGGGGG
CGGCATCGGCACGATCATTCTCGCGCTGGTCGCCATGTACTTCGGCATCGACCCGTCGGTGGTCCTGCAGCAGGGGGGCT
CTCCCCTCACAGCGCCGACAGAGACGAGACAGGCCGGCAAGCCTCCCGCCAGTGACGAACTTGCCCAGTTTGTGTCGGTG
GTTCTGGCCGACACCGAGGATACCTGGCACGAGCTCTTCCGGAAGAACGGCAAGACCTACCAGGAGCCGAAGCTGGTCCT
CTTCACCGGCGCCGTGGAGTCGGCCTGCGGCTATGCCCAGGCCGCCATGGGCCCCTTTTACTGCCCCCTGGACCAGAAGG
TCTACATCGACCTCAGCTTCTACCGGGACCTGAAGGAGCGCTTCAAGGCGCCGGGGGACTTTGCCCAGGCGTACGTCATC
GCCCACGAAGTGGGGCACCACGTCCAGTCGCTCCTCGGCATTTCGGAGAAGGCCCACGACCTCCAGCAGCGGAGCGGTAA
GACCCAGGCGAACCAGCTCTCGGTGCGACTGGAGCTCCAGGCCGACTGCCTGGCCGGCATCTGGGCCCACCACGCCGACC
GGAGCCGGCAGGTTCTCGAAAGCGGCGACGTGGAGGAGGCGCTCCAGGCGGCCACCAGCATCGGCGACGACCGCCTCCAG
CAGCAGGCCCAGGGGTACGTCGTCCCCGAAAGCTTCACCCACGGCAGCTCCGAGCAGCGGGTCCGCTGGTTCAAAACCGG
CCTCGACACCGGCAACTTCGGGGCGTGCAATACCTTCGGGGCCCAATCGTTGTAG

Upstream 100 bases:

>100_bases
GGTGACAAAGAAATAGCTGACACGGGGCGCGGATGGTTCATGGGGGTTATCCGCGCCCCGTGTGCATTCAATCGGCAGAC
CATGACAGGAGTGCCTTGCC

Downstream 100 bases:

>100_bases
ATTGATGGTGCCTTTCCCCTTGGCACGGTAATCGCCTTCTCGTATTTCGCCTGATACCTCTGCTATCAATGGTGACAGCC
GGGCCGACCAGCCCGGCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MRWSDGRRSDNVEDRRGMTVGRKAVGGGIGTIILALVAMYFGIDPSVVLQQGGSPLTAPTETRQAGKPPASDELAQFVSV
VLADTEDTWHELFRKNGKTYQEPKLVLFTGAVESACGYAQAAMGPFYCPLDQKVYIDLSFYRDLKERFKAPGDFAQAYVI
AHEVGHHVQSLLGISEKAHDLQQRSGKTQANQLSVRLELQADCLAGIWAHHADRSRQVLESGDVEEALQAATSIGDDRLQ
QQAQGYVVPESFTHGSSEQRVRWFKTGLDTGNFGACNTFGAQSL

Sequences:

>Translated_284_residues
MRWSDGRRSDNVEDRRGMTVGRKAVGGGIGTIILALVAMYFGIDPSVVLQQGGSPLTAPTETRQAGKPPASDELAQFVSV
VLADTEDTWHELFRKNGKTYQEPKLVLFTGAVESACGYAQAAMGPFYCPLDQKVYIDLSFYRDLKERFKAPGDFAQAYVI
AHEVGHHVQSLLGISEKAHDLQQRSGKTQANQLSVRLELQADCLAGIWAHHADRSRQVLESGDVEEALQAATSIGDDRLQ
QQAQGYVVPESFTHGSSEQRVRWFKTGLDTGNFGACNTFGAQSL
>Mature_284_residues
MRWSDGRRSDNVEDRRGMTVGRKAVGGGIGTIILALVAMYFGIDPSVVLQQGGSPLTAPTETRQAGKPPASDELAQFVSV
VLADTEDTWHELFRKNGKTYQEPKLVLFTGAVESACGYAQAAMGPFYCPLDQKVYIDLSFYRDLKERFKAPGDFAQAYVI
AHEVGHHVQSLLGISEKAHDLQQRSGKTQANQLSVRLELQADCLAGIWAHHADRSRQVLESGDVEEALQAATSIGDDRLQ
QQAQGYVVPESFTHGSSEQRVRWFKTGLDTGNFGACNTFGAQSL

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=289, Percent_Identity=55.363321799308, Blast_Score=316, Evalue=1e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 31078; Mature: 31078

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWSDGRRSDNVEDRRGMTVGRKAVGGGIGTIILALVAMYFGIDPSVVLQQGGSPLTAPT
CCCCCCCCCCCCHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCC
ETRQAGKPPASDELAQFVSVVLADTEDTWHELFRKNGKTYQEPKLVLFTGAVESACGYAQ
HHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHH
AAMGPFYCPLDQKVYIDLSFYRDLKERFKAPGDFAQAYVIAHEVGHHVQSLLGISEKAHD
HHCCCEECCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQQRSGKTQANQLSVRLELQADCLAGIWAHHADRSRQVLESGDVEEALQAATSIGDDRLQ
HHHHCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH
QQAQGYVVPESFTHGSSEQRVRWFKTGLDTGNFGACNTFGAQSL
HHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRWSDGRRSDNVEDRRGMTVGRKAVGGGIGTIILALVAMYFGIDPSVVLQQGGSPLTAPT
CCCCCCCCCCCCHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCC
ETRQAGKPPASDELAQFVSVVLADTEDTWHELFRKNGKTYQEPKLVLFTGAVESACGYAQ
HHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHH
AAMGPFYCPLDQKVYIDLSFYRDLKERFKAPGDFAQAYVIAHEVGHHVQSLLGISEKAHD
HHCCCEECCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQQRSGKTQANQLSVRLELQADCLAGIWAHHADRSRQVLESGDVEEALQAATSIGDDRLQ
HHHHCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH
QQAQGYVVPESFTHGSSEQRVRWFKTGLDTGNFGACNTFGAQSL
HHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]