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The map label for this gene is ybdB [C]

Identifier: 78223865

GI number: 78223865

Start: 3018244

End: 3018687

Strand: Reverse

Name: ybdB [C]

Synonym: Gmet_2669

Alternate gene names: 78223865

Gene position: 3018687-3018244 (Counterclockwise)

Preceding gene: 78223866

Following gene: 78223862

Centisome position: 75.52

GC content: 63.51

Gene sequence:

>444_bases
ATGTACGAGCATCTCTACGACGAACCCATGGGAGAGGATGTGGCGCTCCCCTTCGAGCTTCCCGAGTGGATCGCCTGTGC
CCCCTTCGAGGAATACCTGGGGATGACTATCGAGGAGGCCGAGGGGGGGAAGGCGCGCCTCACCATGCCGTTCCAGGTGA
AACACGCCCAGGGAAAGGGGCTCATGCACGGCGGCGCCGTCACCGCCCTGGCCGATACGGCGGTGGCCATGGCCATCAAG
AGCATGCTCCCCGAAGGGAGCCACTTCGTGACCACCGAACTCAATCTGAAATTCCATGCCCCCATCCACGGGGGAACGGT
CACGGCCAGGGCCGAGGCCATCCGGGAAGACGAGCGGACCATCAGGGGGGTGGCGGAGGTCTTTGACGAAAAAGGGGTGA
AGACCGCCACCTTTACCTCGGTTTTTCGGATCAGGCGGCGGTGA

Upstream 100 bases:

>100_bases
AAGGAAGCCTGGGTCCGGGAGGCCATCGAGGAGAGCTTCATCGACGAGGCCGTGAAGGTCCAACTGCTCAAGTAAGGCCC
TAACGGAGAGAGGAAAGACC

Downstream 100 bases:

>100_bases
AGGGGTCATAATATGGGGAGTGTTTCTGATTGGTTTCCAGTCAGTTCGCCGACCGGCGTCAATTCCCGCCCGAAAGCGCA
GCCAGTTCCGTCCGCCAGTG

Product: phenylacetic acid degradation-related protein

Products: NA

Alternate protein names: Phenylacetic Acid Degradation-Related Protein; Protein Possibly Involved In Aromatic Compounds Catabolism

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MYEHLYDEPMGEDVALPFELPEWIACAPFEEYLGMTIEEAEGGKARLTMPFQVKHAQGKGLMHGGAVTALADTAVAMAIK
SMLPEGSHFVTTELNLKFHAPIHGGTVTARAEAIREDERTIRGVAEVFDEKGVKTATFTSVFRIRRR

Sequences:

>Translated_147_residues
MYEHLYDEPMGEDVALPFELPEWIACAPFEEYLGMTIEEAEGGKARLTMPFQVKHAQGKGLMHGGAVTALADTAVAMAIK
SMLPEGSHFVTTELNLKFHAPIHGGTVTARAEAIREDERTIRGVAEVFDEKGVKTATFTSVFRIRRR
>Mature_147_residues
MYEHLYDEPMGEDVALPFELPEWIACAPFEEYLGMTIEEAEGGKARLTMPFQVKHAQGKGLMHGGAVTALADTAVAMAIK
SMLPEGSHFVTTELNLKFHAPIHGGTVTARAEAIREDERTIRGVAEVFDEKGVKTATFTSVFRIRRR

Specific function: Unknown

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16250; Mature: 16250

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEHLYDEPMGEDVALPFELPEWIACAPFEEYLGMTIEEAEGGKARLTMPFQVKHAQGKG
CCCCCCCCCCCCCEECCCCCCCCEEECCHHHHHCCEEEECCCCEEEEEEEEEEEECCCCC
LMHGGAVTALADTAVAMAIKSMLPEGSHFVTTELNLKFHAPIHGGTVTARAEAIREDERT
EECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCEEHHHHHHHHHHHHH
IRGVAEVFDEKGVKTATFTSVFRIRRR
HHHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MYEHLYDEPMGEDVALPFELPEWIACAPFEEYLGMTIEEAEGGKARLTMPFQVKHAQGKG
CCCCCCCCCCCCCEECCCCCCCCEEECCHHHHHCCEEEECCCCEEEEEEEEEEEECCCCC
LMHGGAVTALADTAVAMAIKSMLPEGSHFVTTELNLKFHAPIHGGTVTARAEAIREDERT
EECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCEEHHHHHHHHHHHHH
IRGVAEVFDEKGVKTATFTSVFRIRRR
HHHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA