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The map label for this gene is rnk [H]

Identifier: 78223803

GI number: 78223803

Start: 2955207

End: 2955635

Strand: Direct

Name: rnk [H]

Synonym: Gmet_2606

Alternate gene names: 78223803

Gene position: 2955207-2955635 (Clockwise)

Preceding gene: 78223801

Following gene: 78223806

Centisome position: 73.93

GC content: 58.97

Gene sequence:

>429_bases
ATGAAAAGATCAGCGGAAGAACGAGCCATCTACATCACTGAATTTGACCAGAGCCGCCTCGAAGAGTTGCTGGACCAGGT
CAACACGGAAGATTCCCGAGACAGCAAGCACCTCAGGGAACTGGAGGACGAGTTGCTGCGCGCCGAAGTCGTTGAACCAC
AGGACATCCCTGCCGACGTAATAACCATGAACTCCCGGGTGTGCCTGAAGGATCTGGACAGCGGCGAGGAGTTGCACTAT
ACCCTCGTCTTTCCCGGCGACGCGCGCCTGGAGGATAACCGCATCTCCATCCTGGCGCCGGTGGGGACGGCGTTGCTCGG
CTACCGCGTGGGGGACACCATTACCTGGAAGGTGCCGGGCGGAACGCGCCGGCTGAAGGTGAAAAAAATCCTCTACCAGC
CGGAAGCGGCGGGGGATTTCCATTTATAG

Upstream 100 bases:

>100_bases
GCCGCGACGGTTGATAAGCGTAAGGGAGGATATATAATGGAACCTTTATTTTCCAGCAGGCCCTACCCTCCGGTAAGCAT
CAGCAAAAGGGAGTTGAACC

Downstream 100 bases:

>100_bases
GGATCTGACGGAATCGGCCCACAAAAAAGCCCGCTCTACGCGGGCTTTTCTTATGCAACAATCCTGGTCACTCAATAGAT
GGCGTAGTTCTCGGGGTCGG

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKRSAEERAIYITEFDQSRLEELLDQVNTEDSRDSKHLRELEDELLRAEVVEPQDIPADVITMNSRVCLKDLDSGEELHY
TLVFPGDARLEDNRISILAPVGTALLGYRVGDTITWKVPGGTRRLKVKKILYQPEAAGDFHL

Sequences:

>Translated_142_residues
MKRSAEERAIYITEFDQSRLEELLDQVNTEDSRDSKHLRELEDELLRAEVVEPQDIPADVITMNSRVCLKDLDSGEELHY
TLVFPGDARLEDNRISILAPVGTALLGYRVGDTITWKVPGGTRRLKVKKILYQPEAAGDFHL
>Mature_142_residues
MKRSAEERAIYITEFDQSRLEELLDQVNTEDSRDSKHLRELEDELLRAEVVEPQDIPADVITMNSRVCLKDLDSGEELHY
TLVFPGDARLEDNRISILAPVGTALLGYRVGDTITWKVPGGTRRLKVKKILYQPEAAGDFHL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=134, Percent_Identity=43.2835820895522, Blast_Score=104, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 16165; Mature: 16165

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSAEERAIYITEFDQSRLEELLDQVNTEDSRDSKHLRELEDELLRAEVVEPQDIPADV
CCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEE
ITMNSRVCLKDLDSGEELHYTLVFPGDARLEDNRISILAPVGTALLGYRVGDTITWKVPG
EEECCCEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEECHHHHHHHEECCCEEEEEECC
GTRRLKVKKILYQPEAAGDFHL
CCCEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKRSAEERAIYITEFDQSRLEELLDQVNTEDSRDSKHLRELEDELLRAEVVEPQDIPADV
CCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEE
ITMNSRVCLKDLDSGEELHYTLVFPGDARLEDNRISILAPVGTALLGYRVGDTITWKVPG
EEECCCEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEECHHHHHHHEECCCEEEEEECC
GTRRLKVKKILYQPEAAGDFHL
CCCEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]