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The map label for this gene is sodB [H]

Identifier: 78223613

GI number: 78223613

Start: 2724867

End: 2725445

Strand: Reverse

Name: sodB [H]

Synonym: Gmet_2410

Alternate gene names: 78223613

Gene position: 2725445-2724867 (Counterclockwise)

Preceding gene: 78223614

Following gene: 78223612

Centisome position: 68.18

GC content: 61.49

Gene sequence:

>579_bases
ATGGCCTATGAAGCTAAGGATTACGCGAAACTGCTCGGCATGGAGGGCTTCAGCGAAGCGCTCCTGAAAAACCATTTCAC
CCTGTACCAGGGTTATGTCACCAACACCAACAAGGTGCTCGACATTCTCGACGGGATGCTCAAGGCGGGCAACACCGCAG
CCCCCGAGTATGCGGAGCTCAAGCGCCGCCTGGGGTGGGAGTTCAACGGCATGCGGCTCCACGAGTTCTACTTCGAGAAC
CTGGGGGGTAAGGGGGGCATCGACCAGGCCGGGAAGCTGGCCGCCAAAATGGCCGCCGATTTCGGGAGCGTCGAGGCGTG
GGAGAAGGACTTCCGGGCCACCGGCGCCATGCGCGGCATCGGCTGGGCGGTTCTCTACCAGGATTCGGCCTCAGGCCGCC
TGATGAACTTCTGGATCAACGAGCATGACGTGGCCCATCCGGCCGGGTGCGCGCCGATCCTGATCATGGATGTGTTCGAG
CATGCCTTCATGCTCGACTACGGGCTCAAGCGGGCCGACTATATCGAGGCCTTCTTCAGGAACATCGACTGGAAGGCTGC
CGAGGCGCGGCTGAAGTAA

Upstream 100 bases:

>100_bases
TTTATCCTTTTTGTCTTGACCTTTGCCGGATACGTGATAAGTTTATGTCCGTGCCCCACGGCACCGGAAGATATTTCACG
ATCCCCAAGGAGGAAGAGTC

Downstream 100 bases:

>100_bases
CCAGGCACAATACGGGATGTAACGTAGGGGCAATTCGTGAATTGCCCCTACGCCGTTTTCAGGGAGGAAAAGCCATGAAA
GCACTCATCATCAGCGTCGA

Product: manganese and iron superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MAYEAKDYAKLLGMEGFSEALLKNHFTLYQGYVTNTNKVLDILDGMLKAGNTAAPEYAELKRRLGWEFNGMRLHEFYFEN
LGGKGGIDQAGKLAAKMAADFGSVEAWEKDFRATGAMRGIGWAVLYQDSASGRLMNFWINEHDVAHPAGCAPILIMDVFE
HAFMLDYGLKRADYIEAFFRNIDWKAAEARLK

Sequences:

>Translated_192_residues
MAYEAKDYAKLLGMEGFSEALLKNHFTLYQGYVTNTNKVLDILDGMLKAGNTAAPEYAELKRRLGWEFNGMRLHEFYFEN
LGGKGGIDQAGKLAAKMAADFGSVEAWEKDFRATGAMRGIGWAVLYQDSASGRLMNFWINEHDVAHPAGCAPILIMDVFE
HAFMLDYGLKRADYIEAFFRNIDWKAAEARLK
>Mature_191_residues
AYEAKDYAKLLGMEGFSEALLKNHFTLYQGYVTNTNKVLDILDGMLKAGNTAAPEYAELKRRLGWEFNGMRLHEFYFENL
GGKGGIDQAGKLAAKMAADFGSVEAWEKDFRATGAMRGIGWAVLYQDSASGRLMNFWINEHDVAHPAGCAPILIMDVFEH
AFMLDYGLKRADYIEAFFRNIDWKAAEARLK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=169, Percent_Identity=28.9940828402367, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI67782305, Length=169, Percent_Identity=28.9940828402367, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=28.4974093264249, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17506561, Length=193, Percent_Identity=27.4611398963731, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321796, Length=176, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21624; Mature: 21493

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYEAKDYAKLLGMEGFSEALLKNHFTLYQGYVTNTNKVLDILDGMLKAGNTAAPEYAEL
CCCCHHHHHHHHCCCCHHHHHHHHCHHHEECEECCHHHHHHHHHHHHHCCCCCCCHHHHH
KRRLGWEFNGMRLHEFYFENLGGKGGIDQAGKLAAKMAADFGSVEAWEKDFRATGAMRGI
HHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
GWAVLYQDSASGRLMNFWINEHDVAHPAGCAPILIMDVFEHAFMLDYGLKRADYIEAFFR
EEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
NIDWKAAEARLK
CCCCHHHHCCCC
>Mature Secondary Structure 
AYEAKDYAKLLGMEGFSEALLKNHFTLYQGYVTNTNKVLDILDGMLKAGNTAAPEYAEL
CCCHHHHHHHHCCCCHHHHHHHHCHHHEECEECCHHHHHHHHHHHHHCCCCCCCHHHHH
KRRLGWEFNGMRLHEFYFENLGGKGGIDQAGKLAAKMAADFGSVEAWEKDFRATGAMRGI
HHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
GWAVLYQDSASGRLMNFWINEHDVAHPAGCAPILIMDVFEHAFMLDYGLKRADYIEAFFR
EEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
NIDWKAAEARLK
CCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]