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The map label for this gene is sdhB [H]

Identifier: 78223598

GI number: 78223598

Start: 2706051

End: 2706806

Strand: Reverse

Name: sdhB [H]

Synonym: Gmet_2395

Alternate gene names: 78223598

Gene position: 2706806-2706051 (Counterclockwise)

Preceding gene: 78223599

Following gene: 78223597

Centisome position: 67.71

GC content: 57.14

Gene sequence:

>756_bases
ATGAGCCACGATAATACCATGAATCTTACTCTCCATGTTTGGCGCCAGAATGGCCCAAAAGATCCGGGAAAGTTCGAGGT
CTACGAGGCCAAGAATGTCAGCCCTGATCAGTCGTTCCTTGAGATGCTCGACGAGGTGAACGAAGATCTCATCAAGGCGG
GCAAGGACCCCATCGCCTTTGACCACGACTGCCGTGAAGGTATTTGCGGCATGTGCTCGCAGGTCATCAATGGCGCTCCC
CACGGCGGTCAGGACCGCACCACCGTCTGCCAACTCCATATGCGGATGTTCAAAGATGGCGACACCATTTACATTGAGCC
GTGGCGTGCCCGGGCATTCCCGATTGTGAAGGATCTGGTCGTCGACCGTGCTGCCCTTGATACGATCATCCAGGCTGGTG
GCTACACCTCTGCCCATACCGGTGGCGTTGCCGACGGCAACGCTCTTCTAGTTCCCAAGGATATCGCTGACTACGCCATG
GACGCTGCCGAGTGCATCGGTTGCGGGGCGTGCGTGGCAGGCTGCCCCAACGGTTCGGCCATGCTCTTTACCTCTGCCAA
GGTTTCCCAACTGGCGGTCCTTCCCCAAGGCAAGGCCGAGGCGAAACGTCGTGTTCAGGAAATGACGGGCGCCCTTCAGG
AGTGTGGCTTCGGCAACTGCACCAACCACTATGAGTGTCAGGCTGCCTGCCCGAAGGGTATCAATGTCAAATTCATCGCG
ACCTTGAATAGGGAATACCTGAAGTCCCTCTTCTAG

Upstream 100 bases:

>100_bases
CTGCTGCATGGGAGTTCAAAGGGGCTAATGCAGAGCCTGAACTCCACATCGAACCTCTGAAGTTTGAAAACGTCCATCTG
GCGATAAGGAGCTACAAATA

Downstream 100 bases:

>100_bases
CGATGCCCTGACTCATTATGAAGCCGTGCAATGGCACGGAGCGATGGGGCGGATTTAACGATCCGCCCCATTTTTTTTTG
ATAGGGGAGTAAGTATGACC

Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MSHDNTMNLTLHVWRQNGPKDPGKFEVYEAKNVSPDQSFLEMLDEVNEDLIKAGKDPIAFDHDCREGICGMCSQVINGAP
HGGQDRTTVCQLHMRMFKDGDTIYIEPWRARAFPIVKDLVVDRAALDTIIQAGGYTSAHTGGVADGNALLVPKDIADYAM
DAAECIGCGACVAGCPNGSAMLFTSAKVSQLAVLPQGKAEAKRRVQEMTGALQECGFGNCTNHYECQAACPKGINVKFIA
TLNREYLKSLF

Sequences:

>Translated_251_residues
MSHDNTMNLTLHVWRQNGPKDPGKFEVYEAKNVSPDQSFLEMLDEVNEDLIKAGKDPIAFDHDCREGICGMCSQVINGAP
HGGQDRTTVCQLHMRMFKDGDTIYIEPWRARAFPIVKDLVVDRAALDTIIQAGGYTSAHTGGVADGNALLVPKDIADYAM
DAAECIGCGACVAGCPNGSAMLFTSAKVSQLAVLPQGKAEAKRRVQEMTGALQECGFGNCTNHYECQAACPKGINVKFIA
TLNREYLKSLF
>Mature_250_residues
SHDNTMNLTLHVWRQNGPKDPGKFEVYEAKNVSPDQSFLEMLDEVNEDLIKAGKDPIAFDHDCREGICGMCSQVINGAPH
GGQDRTTVCQLHMRMFKDGDTIYIEPWRARAFPIVKDLVVDRAALDTIIQAGGYTSAHTGGVADGNALLVPKDIADYAMD
AAECIGCGACVAGCPNGSAMLFTSAKVSQLAVLPQGKAEAKRRVQEMTGALQECGFGNCTNHYECQAACPKGINVKFIAT
LNREYLKSLF

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI1790596, Length=231, Percent_Identity=25.1082251082251, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 27235; Mature: 27104

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00197 2FE2S_FER_1 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHDNTMNLTLHVWRQNGPKDPGKFEVYEAKNVSPDQSFLEMLDEVNEDLIKAGKDPIAF
CCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
DHDCREGICGMCSQVINGAPHGGQDRTTVCQLHMRMFKDGDTIYIEPWRARAFPIVKDLV
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
VDRAALDTIIQAGGYTSAHTGGVADGNALLVPKDIADYAMDAAECIGCGACVAGCPNGSA
HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCHHHCCCCCCCE
MLFTSAKVSQLAVLPQGKAEAKRRVQEMTGALQECGFGNCTNHYECQAACPKGINVKFIA
EEEECCCHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHCCCCCCCCEEEEE
TLNREYLKSLF
ECCHHHHHHCC
>Mature Secondary Structure 
SHDNTMNLTLHVWRQNGPKDPGKFEVYEAKNVSPDQSFLEMLDEVNEDLIKAGKDPIAF
CCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
DHDCREGICGMCSQVINGAPHGGQDRTTVCQLHMRMFKDGDTIYIEPWRARAFPIVKDLV
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
VDRAALDTIIQAGGYTSAHTGGVADGNALLVPKDIADYAMDAAECIGCGACVAGCPNGSA
HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCHHHCCCCCCCE
MLFTSAKVSQLAVLPQGKAEAKRRVQEMTGALQECGFGNCTNHYECQAACPKGINVKFIA
EEEECCCHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHCCCCCCCCEEEEE
TLNREYLKSLF
ECCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027051; 8969504; 9384377; 3114423 [H]