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The map label for this gene is ybeY [C]

Identifier: 78223573

GI number: 78223573

Start: 2678069

End: 2678521

Strand: Reverse

Name: ybeY [C]

Synonym: Gmet_2370

Alternate gene names: 78223573

Gene position: 2678521-2678069 (Counterclockwise)

Preceding gene: 78223574

Following gene: 78223572

Centisome position: 67.01

GC content: 62.91

Gene sequence:

>453_bases
GTGAAGGTAGCGATAGCGAACCGGCAAAGGCGGCACCCGATCGGGACGCCACGCCTCAGAAAAGTGGCGGAGAGGATATT
AAGCGCCTTGGGATATCCCGATAGCGAGCTGTCGGTGGTCATAACCGGCGATCTCGGCATCAGGCGTGTCAACCGCGAGT
ATCTCCACAAGGACCGCCCCACGAACGTCATCTCCTTCGCCATGGCCGAGGGGGAGTTCGGTGCCCTCAATCCCGCCATG
CTGGGGGATGTGATCATCTCCGCGGACACGGCGGCCCGGGAGGCGGAAGAGGGGGGAGTCTCCTTCTGGTCCCGACTCTG
CTTTCTGCTGCTCCACGGCATCCTTCACATTACCGGCTACGACCACGAGCGGAGCGGCGAGGCGGAAGCCCGGCGGATGG
AGGCGAAGGAACGGGAAATCTTCGCGATCCTGGAGAGGGAAGGGCTTGTCTAG

Upstream 100 bases:

>100_bases
AGCTTCAACCGTATCCTGGCCGGCATCTACCATCAGCGCATCGATTACCCGGAGCCGGCCTTCAAGGAAAAAGAGAAACC
GACTGGAGGTAAGAAACCGA

Downstream 100 bases:

>100_bases
CCCCTACGGAGACACGGACGCCGAGGGGAGCCCGCTTCGGCCTTCCCCCACGTTGCCCAACGGCGACCCCGTGAAGCCGT
CGCGCTTCATCGATTCCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MKVAIANRQRRHPIGTPRLRKVAERILSALGYPDSELSVVITGDLGIRRVNREYLHKDRPTNVISFAMAEGEFGALNPAM
LGDVIISADTAAREAEEGGVSFWSRLCFLLLHGILHITGYDHERSGEAEARRMEAKEREIFAILEREGLV

Sequences:

>Translated_150_residues
MKVAIANRQRRHPIGTPRLRKVAERILSALGYPDSELSVVITGDLGIRRVNREYLHKDRPTNVISFAMAEGEFGALNPAM
LGDVIISADTAAREAEEGGVSFWSRLCFLLLHGILHITGYDHERSGEAEARRMEAKEREIFAILEREGLV
>Mature_150_residues
MKVAIANRQRRHPIGTPRLRKVAERILSALGYPDSELSVVITGDLGIRRVNREYLHKDRPTNVISFAMAEGEFGALNPAM
LGDVIISADTAAREAEEGGVSFWSRLCFLLLHGILHITGYDHERSGEAEARRMEAKEREIFAILEREGLV

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_GEOMG (Q39T29)

Other databases:

- EMBL:   CP000148
- RefSeq:   YP_385320.1
- ProteinModelPortal:   Q39T29
- SMR:   Q39T29
- STRING:   Q39T29
- GeneID:   3740047
- GenomeReviews:   CP000148_GR
- KEGG:   gme:Gmet_2370
- NMPDR:   fig|269799.3.peg.2811
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   HGILHIT
- PhylomeDB:   Q39T29
- ProtClustDB:   CLSK828795
- BioCyc:   GMET269799:GMET_2370-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16767; Mature: 16767

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVAIANRQRRHPIGTPRLRKVAERILSALGYPDSELSVVITGDLGIRRVNREYLHKDRP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHCHHHHHCCCC
TNVISFAMAEGEFGALNPAMLGDVIISADTAAREAEEGGVSFWSRLCFLLLHGILHITGY
CCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
DHERSGEAEARRMEAKEREIFAILEREGLV
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKVAIANRQRRHPIGTPRLRKVAERILSALGYPDSELSVVITGDLGIRRVNREYLHKDRP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHCHHHHHCCCC
TNVISFAMAEGEFGALNPAMLGDVIISADTAAREAEEGGVSFWSRLCFLLLHGILHITGY
CCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
DHERSGEAEARRMEAKEREIFAILEREGLV
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA