Click here to switch to the map view.

The map label for this gene is frvX [C]

Identifier: 78223497

GI number: 78223497

Start: 2600934

End: 2602004

Strand: Reverse

Name: frvX [C]

Synonym: Gmet_2294

Alternate gene names: 78223497

Gene position: 2602004-2600934 (Counterclockwise)

Preceding gene: 78223498

Following gene: 78223496

Centisome position: 65.09

GC content: 63.12

Gene sequence:

>1071_bases
ATGCGTCAGGAGTCCCTCGATTTTTTCAAACAGCTGGTCGAAGCCCCAAGCCCCTCCGGCTACGAACAGCCGGCCCAGCG
GGTCTTTCGCGATTACATCGCCCCCTTTGCCGAAGTGACCACCGATGTCATGGGGAACGTGTTCGGCCTCATCCGCGGCG
AGGGTGAAGACCTTCCGCGGGTCATGATCGTGGGGCACTCGGACGAGATCGGCTTCCAGGTGAAGTACATCGACGACAAC
GGTTTCATCTTCTTCGCTCCCATCGGCGGGGTGGATGCCCATCTGACGCCGGGGAAGCGAGTCCGCATCCACACGGCCAA
GGGAGAGGTGGCGGGCGTCATCGGCAAGAAGCCGATCCACCTCATGGATGAAGAGGACCGGAAAAAGGTGGTCCGCCTTG
ACGCCCAGTACATCGACATCGGCGCGGCCGACAAGAATGATGCCCAGGAGGCCGTACGGGTCGGCGATCCGGTTACCTTC
GCCGTCGGCTTCGAGTCGCTCCTGGGGGACCGGGTCGCTTCCCGGGCCTTTGATGACAAAGCCGGGAGCTTCGTGGTGGC
CGAGGTGCTCCGAACCGTGGCCGAATCGGGGGTGAAGCTTCCGGTGGACCTCTACGGTGTCTCGTCCGTGCAGGAGGAAA
TCGGGCTCCGCGGCGGCACCACCAGCTCCTACAGCGTTAACCCCCATGTGGGGATCTGCGTGGAGGTGGATTTTGCCACG
GATCAGCCCGACGTGGAGAAGAAGCACAACGGCGAGGTGAAGCTCGGCAAAGGGCCGATTCTCCCCCGGGGGGCCAACAT
CAACCACCCCCTCTTTGACCTCCTCTCGGCCACGGCGGATCGGGAGGGGATTGCGGTCCAGTACACCGGCATTGCCCGGG
CCACAGGTACCGACGCCAACGTGATGCAGATATCCCGGGGTGGCGTTGCCACAGCCCTGGTGAAGCTGCCGCTCCGCTAC
ATGCACACGCCGGTGGAGGTCATCTCCCTCTCCGATCTGGAGAACGCCGTTCGACTTATCGTCGCTGCGCTGCCGGGTAT
GGGGAAAAAAGAGGCGTTCATTCTGCGCTGA

Upstream 100 bases:

>100_bases
ATTTTCTCGAAAACCTCGATCCCGCCGATCTCGGCAAATATCCCATGTGAATTGATGGGGCGACAGCCCCGTCGTGACAG
ATTTTGGAGAGGAGCCATCA

Downstream 100 bases:

>100_bases
CGAAGAGGGCTCGGAGTGAAACGGTTTTTCTCTTCGAGCCCTCCCTGATTTTCTCTTTGATTTTAACCCCTTTTAACTTG
ACTCACCTTTTTGCCTCGAC

Product: peptidase M42

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MRQESLDFFKQLVEAPSPSGYEQPAQRVFRDYIAPFAEVTTDVMGNVFGLIRGEGEDLPRVMIVGHSDEIGFQVKYIDDN
GFIFFAPIGGVDAHLTPGKRVRIHTAKGEVAGVIGKKPIHLMDEEDRKKVVRLDAQYIDIGAADKNDAQEAVRVGDPVTF
AVGFESLLGDRVASRAFDDKAGSFVVAEVLRTVAESGVKLPVDLYGVSSVQEEIGLRGGTTSSYSVNPHVGICVEVDFAT
DQPDVEKKHNGEVKLGKGPILPRGANINHPLFDLLSATADREGIAVQYTGIARATGTDANVMQISRGGVATALVKLPLRY
MHTPVEVISLSDLENAVRLIVAALPGMGKKEAFILR

Sequences:

>Translated_356_residues
MRQESLDFFKQLVEAPSPSGYEQPAQRVFRDYIAPFAEVTTDVMGNVFGLIRGEGEDLPRVMIVGHSDEIGFQVKYIDDN
GFIFFAPIGGVDAHLTPGKRVRIHTAKGEVAGVIGKKPIHLMDEEDRKKVVRLDAQYIDIGAADKNDAQEAVRVGDPVTF
AVGFESLLGDRVASRAFDDKAGSFVVAEVLRTVAESGVKLPVDLYGVSSVQEEIGLRGGTTSSYSVNPHVGICVEVDFAT
DQPDVEKKHNGEVKLGKGPILPRGANINHPLFDLLSATADREGIAVQYTGIARATGTDANVMQISRGGVATALVKLPLRY
MHTPVEVISLSDLENAVRLIVAALPGMGKKEAFILR
>Mature_356_residues
MRQESLDFFKQLVEAPSPSGYEQPAQRVFRDYIAPFAEVTTDVMGNVFGLIRGEGEDLPRVMIVGHSDEIGFQVKYIDDN
GFIFFAPIGGVDAHLTPGKRVRIHTAKGEVAGVIGKKPIHLMDEEDRKKVVRLDAQYIDIGAADKNDAQEAVRVGDPVTF
AVGFESLLGDRVASRAFDDKAGSFVVAEVLRTVAESGVKLPVDLYGVSSVQEEIGLRGGTTSSYSVNPHVGICVEVDFAT
DQPDVEKKHNGEVKLGKGPILPRGANINHPLFDLLSATADREGIAVQYTGIARATGTDANVMQISRGGVATALVKLPLRY
MHTPVEVISLSDLENAVRLIVAALPGMGKKEAFILR

Specific function: Unknown

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=342, Percent_Identity=31.5789473684211, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI87082417, Length=346, Percent_Identity=32.9479768786127, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1788727, Length=350, Percent_Identity=29.1428571428571, Blast_Score=114, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 38423; Mature: 38423

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQESLDFFKQLVEAPSPSGYEQPAQRVFRDYIAPFAEVTTDVMGNVFGLIRGEGEDLPR
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCE
VMIVGHSDEIGFQVKYIDDNGFIFFAPIGGVDAHLTPGKRVRIHTAKGEVAGVIGKKPIH
EEEEECCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEECCCCCEE
LMDEEDRKKVVRLDAQYIDIGAADKNDAQEAVRVGDPVTFAVGFESLLGDRVASRAFDDK
ECCCHHHHHHEEECCEEEEECCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCC
AGSFVVAEVLRTVAESGVKLPVDLYGVSSVQEEIGLRGGTTSSYSVNPHVGICVEVDFAT
CCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEECCCCEEEEEEEECCC
DQPDVEKKHNGEVKLGKGPILPRGANINHPLFDLLSATADREGIAVQYTGIARATGTDAN
CCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECEEECCCCCCC
VMQISRGGVATALVKLPLRYMHTPVEVISLSDLENAVRLIVAALPGMGKKEAFILR
EEEEECCCHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHCCCCCCCCEEEEC
>Mature Secondary Structure
MRQESLDFFKQLVEAPSPSGYEQPAQRVFRDYIAPFAEVTTDVMGNVFGLIRGEGEDLPR
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCE
VMIVGHSDEIGFQVKYIDDNGFIFFAPIGGVDAHLTPGKRVRIHTAKGEVAGVIGKKPIH
EEEEECCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEECCCCCEE
LMDEEDRKKVVRLDAQYIDIGAADKNDAQEAVRVGDPVTFAVGFESLLGDRVASRAFDDK
ECCCHHHHHHEEECCEEEEECCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCC
AGSFVVAEVLRTVAESGVKLPVDLYGVSSVQEEIGLRGGTTSSYSVNPHVGICVEVDFAT
CCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEECCCCEEEEEEEECCC
DQPDVEKKHNGEVKLGKGPILPRGANINHPLFDLLSATADREGIAVQYTGIARATGTDAN
CCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECEEECCCCCCC
VMQISRGGVATALVKLPLRYMHTPVEVISLSDLENAVRLIVAALPGMGKKEAFILR
EEEEECCCHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]