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The map label for this gene is intR [C]

Identifier: 78223475

GI number: 78223475

Start: 2574639

End: 2575652

Strand: Direct

Name: intR [C]

Synonym: Gmet_2271

Alternate gene names: 78223475

Gene position: 2574639-2575652 (Clockwise)

Preceding gene: 78223460

Following gene: 78223476

Centisome position: 64.41

GC content: 55.13

Gene sequence:

>1014_bases
TTGATATCAGGCCGCCAAGGAAGATTGACCCACTGCCTATATAGGGTCATTTTTCAAAGCCGATTAACAGACATCCATGA
AGCGCACTACCACCATGAAGCATTGCTCTTTGACAACGAGGAGAAGGAACAAGGAACCATCATCAGAAAACCCGGCTCCA
GGAAGCTCTATATCCTCTTCTACTACTTCAACCGCCGGGTGGAGAAAACGACCGGCCTTGCCGACACGAAGAAGAACCGG
GAGAAGGTCCGGCTCTGGCTGGATCGGATCATCGAACGTAGGGACGCGGGTAAGCTCATCTTTGCCGATGCCTTCCCCGG
CGCACCAGAAAACGAGAAGGCATACTTTGCCAAGCTGGAGGGGTGGCAGTATGCCCCGGAACCGCGGGACATCCTCTTTG
GGGCGTATCTCCAGGAGTGGTATCAAAACGTCTGGAGCCATTACCCGGAGGGGACCAAGAAGGACGACTACCGGCTGATT
ATCGACTATTGGCTGGTGCCGTTCTTTGGGGAGATGACCTTCTTCCAGATCAGCGGGGTGGAGATTCAGAAGTTCATTGC
CTCCCTCAAGTGGAAGAAGGGGACCAAGAAGGGACAACCCTTATCGAAGGCCAGGGCGAAGAATATCCTGATACCGCTAC
GCACCATCTGGAACGATGCCTGCGACCAATACCGTTGGGTACTCCACAACCCCTTCACCAACCTGAAGAAGCACCTTCCC
AAGACCCAACCGAAACGACGGGAGGGATTCCGGTTCGATGAATGGCGGGAATTCCTGAAGGATGTCTGGACCAAGGCGGG
GAAAGCCAGCGGGATAACCGACAAGGTGCCCTATTCCATGCGCCACTCCTTCGCGGCCTGGGCGCTTACCTTGCGGATCG
ATCTAAACCGGCGGGTGCGGCTCATGGGCCACGGTTCCAAGAAAATGGTCTATGAGGTCTACGGGGATTACATCGACGGG
CTGGAGGAGGACTTCTGGAAGATTCTGGAATACTTCGGCCGGGACTGGTGTTAG

Upstream 100 bases:

>100_bases
AAAACTGTGTAACCCGGCTCCGGAGGATGGGGATTTTGATCGGCATCCAATTTTGACCCTTTTCGGCGTCGAAGGGTGAC
CCACCACCGTTGATAACTGC

Downstream 100 bases:

>100_bases
CGGCAATGTAAAAATGACCCACCTCGGAAATTGAAAATTGACCCACTCTTCCTGATAACCTAGCCGACCTGGAGGGTCGG
CATGATCGGAAAGGAAGAGT

Product: hypothetical protein

Products: NA

Alternate protein names: Phage Integrase Family Protein; Phage Integrase; Integrase; Pore-Forming Cytotoxin Integrase; Integrative Genetic Element

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MISGRQGRLTHCLYRVIFQSRLTDIHEAHYHHEALLFDNEEKEQGTIIRKPGSRKLYILFYYFNRRVEKTTGLADTKKNR
EKVRLWLDRIIERRDAGKLIFADAFPGAPENEKAYFAKLEGWQYAPEPRDILFGAYLQEWYQNVWSHYPEGTKKDDYRLI
IDYWLVPFFGEMTFFQISGVEIQKFIASLKWKKGTKKGQPLSKARAKNILIPLRTIWNDACDQYRWVLHNPFTNLKKHLP
KTQPKRREGFRFDEWREFLKDVWTKAGKASGITDKVPYSMRHSFAAWALTLRIDLNRRVRLMGHGSKKMVYEVYGDYIDG
LEEDFWKILEYFGRDWC

Sequences:

>Translated_337_residues
MISGRQGRLTHCLYRVIFQSRLTDIHEAHYHHEALLFDNEEKEQGTIIRKPGSRKLYILFYYFNRRVEKTTGLADTKKNR
EKVRLWLDRIIERRDAGKLIFADAFPGAPENEKAYFAKLEGWQYAPEPRDILFGAYLQEWYQNVWSHYPEGTKKDDYRLI
IDYWLVPFFGEMTFFQISGVEIQKFIASLKWKKGTKKGQPLSKARAKNILIPLRTIWNDACDQYRWVLHNPFTNLKKHLP
KTQPKRREGFRFDEWREFLKDVWTKAGKASGITDKVPYSMRHSFAAWALTLRIDLNRRVRLMGHGSKKMVYEVYGDYIDG
LEEDFWKILEYFGRDWC
>Mature_337_residues
MISGRQGRLTHCLYRVIFQSRLTDIHEAHYHHEALLFDNEEKEQGTIIRKPGSRKLYILFYYFNRRVEKTTGLADTKKNR
EKVRLWLDRIIERRDAGKLIFADAFPGAPENEKAYFAKLEGWQYAPEPRDILFGAYLQEWYQNVWSHYPEGTKKDDYRLI
IDYWLVPFFGEMTFFQISGVEIQKFIASLKWKKGTKKGQPLSKARAKNILIPLRTIWNDACDQYRWVLHNPFTNLKKHLP
KTQPKRREGFRFDEWREFLKDVWTKAGKASGITDKVPYSMRHSFAAWALTLRIDLNRRVRLMGHGSKKMVYEVYGDYIDG
LEEDFWKILEYFGRDWC

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome (By Similarity). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40313; Mature: 40313

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISGRQGRLTHCLYRVIFQSRLTDIHEAHYHHEALLFDNEEKEQGTIIRKPGSRKLYILF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEECCCCCEEEEEE
YYFNRRVEKTTGLADTKKNREKVRLWLDRIIERRDAGKLIFADAFPGAPENEKAYFAKLE
EEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEC
GWQYAPEPRDILFGAYLQEWYQNVWSHYPEGTKKDDYRLIIDYWLVPFFGEMTFFQISGV
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCEEEEEECCH
EIQKFIASLKWKKGTKKGQPLSKARAKNILIPLRTIWNDACDQYRWVLHNPFTNLKKHLP
HHHHHHHHHHHCCCCCCCCCHHHHHHCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHCC
KTQPKRREGFRFDEWREFLKDVWTKAGKASGITDKVPYSMRHSFAAWALTLRIDLNRRVR
CCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEEEEEEEECCCEEE
LMGHGSKKMVYEVYGDYIDGLEEDFWKILEYFGRDWC
EEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MISGRQGRLTHCLYRVIFQSRLTDIHEAHYHHEALLFDNEEKEQGTIIRKPGSRKLYILF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEECCCCCEEEEEE
YYFNRRVEKTTGLADTKKNREKVRLWLDRIIERRDAGKLIFADAFPGAPENEKAYFAKLE
EEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEC
GWQYAPEPRDILFGAYLQEWYQNVWSHYPEGTKKDDYRLIIDYWLVPFFGEMTFFQISGV
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCEEEEEECCH
EIQKFIASLKWKKGTKKGQPLSKARAKNILIPLRTIWNDACDQYRWVLHNPFTNLKKHLP
HHHHHHHHHHHCCCCCCCCCHHHHHHCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHCC
KTQPKRREGFRFDEWREFLKDVWTKAGKASGITDKVPYSMRHSFAAWALTLRIDLNRRVR
CCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEEEEEEEECCCEEE
LMGHGSKKMVYEVYGDYIDGLEEDFWKILEYFGRDWC
EEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA