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The map label for this gene is yxkH [H]

Identifier: 78223230

GI number: 78223230

Start: 2263057

End: 2263884

Strand: Reverse

Name: yxkH [H]

Synonym: Gmet_2023

Alternate gene names: 78223230

Gene position: 2263884-2263057 (Counterclockwise)

Preceding gene: 78223231

Following gene: 78223229

Centisome position: 56.63

GC content: 62.08

Gene sequence:

>828_bases
ATGGACACGATTCCGGCAATGACAGCCCCGGTCCTCATGTACCATGAGGTAACCGCCACCAGCGAGCAGGACAAGGCGGT
GCGAAAGACCAACCCAGCCTACTGCGTGACGGCCGATGCGTTCCGCAGTCAGATGGAGCAACTGACTGCCGGCGGTTTTC
GGTCCCTCTCCCTGGATGATCTCCTGACTGGAAACGGCGAGCGGAACGGGGTCGTCATCACCTTCGACGACGGGTGGGAC
AACAACCACAGCGCTGCCTGGCCCATTCTCACAGGACTGGGGCTCACCGCCACCATCTTCGTGGTTTCCTGCTTCATGGG
GCAACCCGGCTACATGACGTGGGAGCAGGTTCGGGAGTTGGCCGATGCCGGCATTTCGATCCAGTCCCATACGGTCAGTC
ACCGCCCCCTGGGGCTTCTCACCGACGGGGAGATCCGGGCCGAGCTGGAGGATTCGAAAAAGGCCATTGAGGACCGGATC
GGCCGTGCCGTGAACCACATCAGCATGCCCCAGGGGGTCTTCGACCGCCGCGTCATAGAGATGGCCGCTCAGGCCGGCTA
CCGCTCCGTAAGCACCTCAGAGCCGGTGATCCGGCACAGGGGGGGAACCCCGGCAGTGCTGGGGAGGATCAACGTTTCGG
GGTCCTATGACCTCGCCACCTTCGGCCGGATCGTGGCGGGAGACCGGTCGGTGCTCCTCCCCATGATCATCAACAAGAAG
GCCAAGAACTTCGTCAAGAGCCTGGTGGGGTACGGCACTTACCGCAAGCTCTACCGGTTCTGCTACCGCATCGACGATTC
CGGAACAGGGAATATCAGCAATCCATGA

Upstream 100 bases:

>100_bases
TTCCTGCTCACCTTCGACATCTGGCATCACTGCTACCTGGCCAACGATCCCCTCGGCGTCACGCCGCCGAGCCTGAACGA
GTATCTGGGGTAGGGCGACG

Downstream 100 bases:

>100_bases
AACGTACGCTTGACTATACCTTCACGACCAATTACGCGGATCACCGCCAGAACATCCACTCCTTCTGGGAGCGGATCAAC
GGCCACCGCAACGAGCGCTT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MDTIPAMTAPVLMYHEVTATSEQDKAVRKTNPAYCVTADAFRSQMEQLTAGGFRSLSLDDLLTGNGERNGVVITFDDGWD
NNHSAAWPILTGLGLTATIFVVSCFMGQPGYMTWEQVRELADAGISIQSHTVSHRPLGLLTDGEIRAELEDSKKAIEDRI
GRAVNHISMPQGVFDRRVIEMAAQAGYRSVSTSEPVIRHRGGTPAVLGRINVSGSYDLATFGRIVAGDRSVLLPMIINKK
AKNFVKSLVGYGTYRKLYRFCYRIDDSGTGNISNP

Sequences:

>Translated_275_residues
MDTIPAMTAPVLMYHEVTATSEQDKAVRKTNPAYCVTADAFRSQMEQLTAGGFRSLSLDDLLTGNGERNGVVITFDDGWD
NNHSAAWPILTGLGLTATIFVVSCFMGQPGYMTWEQVRELADAGISIQSHTVSHRPLGLLTDGEIRAELEDSKKAIEDRI
GRAVNHISMPQGVFDRRVIEMAAQAGYRSVSTSEPVIRHRGGTPAVLGRINVSGSYDLATFGRIVAGDRSVLLPMIINKK
AKNFVKSLVGYGTYRKLYRFCYRIDDSGTGNISNP
>Mature_275_residues
MDTIPAMTAPVLMYHEVTATSEQDKAVRKTNPAYCVTADAFRSQMEQLTAGGFRSLSLDDLLTGNGERNGVVITFDDGWD
NNHSAAWPILTGLGLTATIFVVSCFMGQPGYMTWEQVRELADAGISIQSHTVSHRPLGLLTDGEIRAELEDSKKAIEDRI
GRAVNHISMPQGVFDRRVIEMAAQAGYRSVSTSEPVIRHRGGTPAVLGRINVSGSYDLATFGRIVAGDRSVLLPMIINKK
AKNFVKSLVGYGTYRKLYRFCYRIDDSGTGNISNP

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 30079; Mature: 30079

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTIPAMTAPVLMYHEVTATSEQDKAVRKTNPAYCVTADAFRSQMEQLTAGGFRSLSLDD
CCCCCCCHHHHHEEEEHHCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHH
LLTGNGERNGVVITFDDGWDNNHSAAWPILTGLGLTATIFVVSCFMGQPGYMTWEQVREL
HHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
ADAGISIQSHTVSHRPLGLLTDGEIRAELEDSKKAIEDRIGRAVNHISMPQGVFDRRVIE
HHCCCEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
MAAQAGYRSVSTSEPVIRHRGGTPAVLGRINVSGSYDLATFGRIVAGDRSVLLPMIINKK
HHHHCCCCCCCCCCCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEHHHHHHHH
AKNFVKSLVGYGTYRKLYRFCYRIDDSGTGNISNP
HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDTIPAMTAPVLMYHEVTATSEQDKAVRKTNPAYCVTADAFRSQMEQLTAGGFRSLSLDD
CCCCCCCHHHHHEEEEHHCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHH
LLTGNGERNGVVITFDDGWDNNHSAAWPILTGLGLTATIFVVSCFMGQPGYMTWEQVREL
HHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
ADAGISIQSHTVSHRPLGLLTDGEIRAELEDSKKAIEDRIGRAVNHISMPQGVFDRRVIE
HHCCCEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
MAAQAGYRSVSTSEPVIRHRGGTPAVLGRINVSGSYDLATFGRIVAGDRSVLLPMIINKK
HHHHCCCCCCCCCCCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEHHHHHHHH
AKNFVKSLVGYGTYRKLYRFCYRIDDSGTGNISNP
HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]