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The map label for this gene is yibD [C]

Identifier: 78223217

GI number: 78223217

Start: 2249708

End: 2250625

Strand: Reverse

Name: yibD [C]

Synonym: Gmet_2010

Alternate gene names: 78223217

Gene position: 2250625-2249708 (Counterclockwise)

Preceding gene: 78223218

Following gene: 78223216

Centisome position: 56.3

GC content: 41.39

Gene sequence:

>918_bases
ATGGTAAAAGTTACAATTATAATACCAACTTATAACCCTAGAGAACATCTAATTGATACTCTGTTATCTGTAAGAACGCA
AAATTTTACTAATATTGAGGTTTTAATTGTTGATGACGGCTCAACGGTTGATGTGTCAACACTGATTAAGCCATACATCA
CAGCAGATAATATTCGTTGTATACGGAGGAAAAACGGTGGAACCGCGGCGGCTAGGAATACCGGCATCACCAATTCAACG
GGAGAGTACATTGCTTTTCTGGACCATGACGACATCTGGTTGCCCGATAAAGTTGCACTCCAGGTTGAGGCCTTGGATCG
GAATCTATCCTGTGGACTGACTTATTGTAATTTTCAAATTCTCGATGAGCAGACTGGCAGCTTGATCAACCCTCATCGCC
AAGGGGAGGGGGGCTGCATGTTTGAAAAGTTTCTTTACAGAAATTATATAACAACAGCCTCACAGATCATGGTTCGGAGA
TCATGTTTCGACCAGCTCGGTTTGTTCGACGAATCGCTTCCCATAGTTGATGATTACGATTTTTATCTGCGCCTGAGCAG
ATGTTACGACATTCATTATGACCCCCGGGTCTTGACTCACTGGAGAAGCCATCAGTTCAACACCAGTAAGAATTATGAGA
AAACGCAACTGGGAAGGATCAAAGTCAAGGAAACTGCCTTAAACCGTTGGGCTCTTTCGGATAACCAAAAGAAAATACTT
TTCAAAGGCTTACGCAGGGATTACTACGAATTGGCCTATTACTATCTTAATTCAGAGAAGTACAGCGACGCACGTAATTA
TTTCAGAAAGGCCGTCCCGTATAGACCAGTTAAGAGTATTGTTTATTATCTTTCTACATGCGTGCCTGGCCTTTCTTATC
TCAATATGAAGGCTTTAAAGAATGATTTTTTGAAATGA

Upstream 100 bases:

>100_bases
ATATAGGCAATTTGCGTGTGTTGGGATGCAAAAAGATTAGTTAGTTTATTCTGTTTGTGTACAGCTAACTCGGGCTAATC
GAACTTGGGCATTTGATTTT

Downstream 100 bases:

>100_bases
AACGAAATCTTGTTGAGTATTGCCGATTTCTGTATTTGTTTCAGAGAGACAAAGGTATTTCATGCTTGGTTTAGGTCTCA
GTGAAATAGTTCCGTATGTG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MVKVTIIIPTYNPREHLIDTLLSVRTQNFTNIEVLIVDDGSTVDVSTLIKPYITADNIRCIRRKNGGTAAARNTGITNST
GEYIAFLDHDDIWLPDKVALQVEALDRNLSCGLTYCNFQILDEQTGSLINPHRQGEGGCMFEKFLYRNYITTASQIMVRR
SCFDQLGLFDESLPIVDDYDFYLRLSRCYDIHYDPRVLTHWRSHQFNTSKNYEKTQLGRIKVKETALNRWALSDNQKKIL
FKGLRRDYYELAYYYLNSEKYSDARNYFRKAVPYRPVKSIVYYLSTCVPGLSYLNMKALKNDFLK

Sequences:

>Translated_305_residues
MVKVTIIIPTYNPREHLIDTLLSVRTQNFTNIEVLIVDDGSTVDVSTLIKPYITADNIRCIRRKNGGTAAARNTGITNST
GEYIAFLDHDDIWLPDKVALQVEALDRNLSCGLTYCNFQILDEQTGSLINPHRQGEGGCMFEKFLYRNYITTASQIMVRR
SCFDQLGLFDESLPIVDDYDFYLRLSRCYDIHYDPRVLTHWRSHQFNTSKNYEKTQLGRIKVKETALNRWALSDNQKKIL
FKGLRRDYYELAYYYLNSEKYSDARNYFRKAVPYRPVKSIVYYLSTCVPGLSYLNMKALKNDFLK
>Mature_305_residues
MVKVTIIIPTYNPREHLIDTLLSVRTQNFTNIEVLIVDDGSTVDVSTLIKPYITADNIRCIRRKNGGTAAARNTGITNST
GEYIAFLDHDDIWLPDKVALQVEALDRNLSCGLTYCNFQILDEQTGSLINPHRQGEGGCMFEKFLYRNYITTASQIMVRR
SCFDQLGLFDESLPIVDDYDFYLRLSRCYDIHYDPRVLTHWRSHQFNTSKNYEKTQLGRIKVKETALNRWALSDNQKKIL
FKGLRRDYYELAYYYLNSEKYSDARNYFRKAVPYRPVKSIVYYLSTCVPGLSYLNMKALKNDFLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=120, Percent_Identity=35.8333333333333, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788372, Length=190, Percent_Identity=30.5263157894737, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787259, Length=206, Percent_Identity=29.6116504854369, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 35528; Mature: 35528

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKVTIIIPTYNPREHLIDTLLSVRTQNFTNIEVLIVDDGSTVDVSTLIKPYITADNIRC
CEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEHHHHHHCCCCCCCEEE
IRRKNGGTAAARNTGITNSTGEYIAFLDHDDIWLPDKVALQVEALDRNLSCGLTYCNFQI
EEECCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCHHEEEEEECCCCCCCCEEEEEEEE
LDEQTGSLINPHRQGEGGCMFEKFLYRNYITTASQIMVRRSCFDQLGLFDESLPIVDDYD
ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
FYLRLSRCYDIHYDPRVLTHWRSHQFNTSKNYEKTQLGRIKVKETALNRWALSDNQKKIL
HHEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHCCEEEEHHHHHHHHCCCCCCHHHH
FKGLRRDYYELAYYYLNSEKYSDARNYFRKAVPYRPVKSIVYYLSTCVPGLSYLNMKALK
HHHHHHHHHEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
NDFLK
HHHCC
>Mature Secondary Structure
MVKVTIIIPTYNPREHLIDTLLSVRTQNFTNIEVLIVDDGSTVDVSTLIKPYITADNIRC
CEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEHHHHHHCCCCCCCEEE
IRRKNGGTAAARNTGITNSTGEYIAFLDHDDIWLPDKVALQVEALDRNLSCGLTYCNFQI
EEECCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCHHEEEEEECCCCCCCCEEEEEEEE
LDEQTGSLINPHRQGEGGCMFEKFLYRNYITTASQIMVRRSCFDQLGLFDESLPIVDDYD
ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
FYLRLSRCYDIHYDPRVLTHWRSHQFNTSKNYEKTQLGRIKVKETALNRWALSDNQKKIL
HHEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHCCEEEEHHHHHHHHCCCCCCHHHH
FKGLRRDYYELAYYYLNSEKYSDARNYFRKAVPYRPVKSIVYYLSTCVPGLSYLNMKALK
HHHHHHHHHEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
NDFLK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA