| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
Click here to switch to the map view.
The map label for this gene is pilQ [H]
Identifier: 78223066
GI number: 78223066
Start: 2071154
End: 2073739
Strand: Reverse
Name: pilQ [H]
Synonym: Gmet_1859
Alternate gene names: 78223066
Gene position: 2073739-2071154 (Counterclockwise)
Preceding gene: 78223067
Following gene: 78223065
Centisome position: 51.88
GC content: 53.44
Gene sequence:
>2586_bases ATGAGGATCATCTTCAAGATAATAGCTTTCTTGTCCTTTTTTGCTTTCCTGTCAGGGTGTGGGGCCGGACTAACTGCATT CAGCAAGGGAGAGCGGCTTGAGCGGGAAGGAAAGCTCGACGAGGCTGTCATCAAGTATTCCGAGGCGGTCGCATCCAATC CGGAGATGAACGAATACCGCATGAGGCTCCTCAAGACGAGCGAGGAAGCGGCGCTTCGGCATCTGAGCAAGGGAGATGAG TTCATTGCCCTCAAGAATTACGATGCAGCGCTTGTCGAGTACCAGGCAGCAGTTGCCCTCGATCCGTCGCTTCAACGGGC GAAACAGGAGAGCGACAAGCTCGTTCGCCAAAAGAATTCGAGAACCTATTTCAAAGAAGGACAGGATTTTGAACGGGGTA ACAAACCAAGAGAAGCACTCCAGGCCTATCGCAAGGCACTTGACCTCGACGGGCAAAACAAAGAGGCAAAGGAAGCCCTT GAGCGTCTGTTGAGCACAAAAAAAACCCGACTGGAAGGGTATGAGCTGAATCTGAAGTCCACAAAGCCAATTACCCTGAA ATTCAAAGACGCAAACCTGAAAGACGTCTTCTACATAGTTACCCAACTTTCCGGAATCAACTTTATCTTTGATGACACAA TCAAGGACCAAAAAGTAACGATTTATCTGGAAAATGCAAATTTCCAGCAGGCCCTCGACCTGTTGACCAACATGAACAAG CTCGGTAAGAAAGTGCTGAACGAGAGCACCATACTCATCTTTCCTAAAACACCCGAGAAATCAAAGCAGTATGAAGATCT GGTCGTCAAGACGTTTTTCCTGAACACCCTCGATGCCAAGAAGGCGGTGAACCTTCTCCGGACGATGCTTCAGGTTCGCA AGGTTTACGTTAACGAAGAGTTGAATGCTATTGTTGTGCGTGATACGTCTGAACTGGTCGATGTGGCGGGCAAGATTCTC GAAGCCAATGATGTTCCCGATGCCGAGGTGCTGCTGGACGTTGAGGTCATCGAGGTGTCGAAACGGAACATAGAGAACTT TGGCCTCGCCCTGAGCAAATATGCCGTGTCCCTGAATACCCAGACACCGGGCGGGGGGTTCCTGAATGATACATTTTCAA GGGCATCGGTGAGTTCAAGCACAGGAACTACTATACAGGGAACAGCTGGGAGTGAGTTGTTGCAGACGTTCTCATGGAAC GGTTACAGCGGATTTATGACGGTCCCCAGTGCCTCGTACAGTTTTGGCAAGAGCATTACCAACGCGGAGGTGCTTGCCAA TCCGAAAATCAGGGTCAAGAATCGGGAAAAATCCAAGTTCACCGTTGGTACCCGCGTGCCGATTACAACCACGTCAACAA CCGGCACAACCGGCGGCTTCAGTGTGAACGTCCAGTACGTGGATGTCGGCGTCAAATTGAACGCTGAACCGACCATCATG CTCAATAACGAGGTCTCTATCAAGCTGGGACTTGAGGTCAGTTCGATTATCGATAAGCAGACAGTGGGCGGAACGGACTC TGCGACAACGGTCGTAACCATCGGAACCCGTAACCTCGATACGGTCTTGAACCTCAAGGATGGAGAAACAAGTGTCATTG GTGGATTGATTGAAGACAACAAGCAGAAGGGAAAGCAGAAAATCTTTTTGCTGGGTGACATCCCCATCATTGGCCCGCTT CTATCCAACAACTCCAACGATAACCAGAAGCGTGAACTGATTCTCGCCATTACTCCGCGTCTGGTCCGTTCCGTCACCGT TCCCGAGCCTGATCTTGTTTCCTTCTGGTCGGGCAAGGAGGACGATCCCTCGGTTGTCAAACCATTCGCTTCATTTGAGC TTGAGCCGGAGTTTGCCATCGGCCAACCCAAAACCGTCAAGCAGCCGGCAGCATCGCCTGCACCGGTTCCTGCTTCTGTC TCTGCACCTGCCCAGAGAGTTGCGCCTCTACAACCCGTTCCCGGTAGTCCGGCACCCACGGCAGCCCCGCAGACAACGAC TTCCCCGGAAGTCAAACAATCGGCGGCGCCGGCTCCAGGTCAGCAGCCTGCCCCGCCGTCCACAGCGCAATCCCAGGCGG TTGCGCCCCTTCCCGTACCGGCTTCTCCTGCGGCTCCTGCCGCGACGGTGGCAGCAGCGTCTGCCGTCCCTGTTGCTGCA GCACCTGCGCCAGCCGTGCGCGGAAGCCTTAATATATCTGCACCGGCAGCTGTGAATCTCGGCTCCCAGTTCAAGGTCGA GATCAGGGTCTCCGACGTCAAGGGCCTCCTTAAGGCGCCCTTTGTCCTTATCTACGATCCGATTTTCATAGATTATGTGG GGGCAGTCGAAGGGACGTTCCTGAATCGGGATGGCAAGCCGACCAGCTTCAACGCCCAGGTAGATAAGGCGAAGGGAAGG GTGACCATTACATTGGCGCGAACCGGTGCCGAAGGCATCGACGGTGCCGGTTCGCTCCTCACCGCGACCTTCACTGCCAA GAACAAGGGGCCGGCCAGCCTCGGCCTCCAGAGCGTGAACTTCACTGACCAGGCAAATAAGCCGATTGATGTCGTACCCT ACAATACGGTTGTCGAAGTTAAGTGA
Upstream 100 bases:
>100_bases TCTCTTACCGACGGAAGCGAGATGGTGATTCCCCTTGTCGAGAACCGGCCTCTCGCCGGCCAGATACGATGAACGTCCGA TGGTTTAAGGAGCCGCATAC
Downstream 100 bases:
>100_bases GCGTGAAGTTTATCGGTGTCTCGACAGTGAGGTATATACGAAACCGTAAGGGATTGAGCTTTATTGAGCTCATAATGACT GTAACCATTCTCGGTATACT
Product: type II and III secretion system protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 861; Mature: 861
Protein sequence:
>861_residues MRIIFKIIAFLSFFAFLSGCGAGLTAFSKGERLEREGKLDEAVIKYSEAVASNPEMNEYRMRLLKTSEEAALRHLSKGDE FIALKNYDAALVEYQAAVALDPSLQRAKQESDKLVRQKNSRTYFKEGQDFERGNKPREALQAYRKALDLDGQNKEAKEAL ERLLSTKKTRLEGYELNLKSTKPITLKFKDANLKDVFYIVTQLSGINFIFDDTIKDQKVTIYLENANFQQALDLLTNMNK LGKKVLNESTILIFPKTPEKSKQYEDLVVKTFFLNTLDAKKAVNLLRTMLQVRKVYVNEELNAIVVRDTSELVDVAGKIL EANDVPDAEVLLDVEVIEVSKRNIENFGLALSKYAVSLNTQTPGGGFLNDTFSRASVSSSTGTTIQGTAGSELLQTFSWN GYSGFMTVPSASYSFGKSITNAEVLANPKIRVKNREKSKFTVGTRVPITTTSTTGTTGGFSVNVQYVDVGVKLNAEPTIM LNNEVSIKLGLEVSSIIDKQTVGGTDSATTVVTIGTRNLDTVLNLKDGETSVIGGLIEDNKQKGKQKIFLLGDIPIIGPL LSNNSNDNQKRELILAITPRLVRSVTVPEPDLVSFWSGKEDDPSVVKPFASFELEPEFAIGQPKTVKQPAASPAPVPASV SAPAQRVAPLQPVPGSPAPTAAPQTTTSPEVKQSAAPAPGQQPAPPSTAQSQAVAPLPVPASPAAPAATVAAASAVPVAA APAPAVRGSLNISAPAAVNLGSQFKVEIRVSDVKGLLKAPFVLIYDPIFIDYVGAVEGTFLNRDGKPTSFNAQVDKAKGR VTITLARTGAEGIDGAGSLLTATFTAKNKGPASLGLQSVNFTDQANKPIDVVPYNTVVEVK
Sequences:
>Translated_861_residues MRIIFKIIAFLSFFAFLSGCGAGLTAFSKGERLEREGKLDEAVIKYSEAVASNPEMNEYRMRLLKTSEEAALRHLSKGDE FIALKNYDAALVEYQAAVALDPSLQRAKQESDKLVRQKNSRTYFKEGQDFERGNKPREALQAYRKALDLDGQNKEAKEAL ERLLSTKKTRLEGYELNLKSTKPITLKFKDANLKDVFYIVTQLSGINFIFDDTIKDQKVTIYLENANFQQALDLLTNMNK LGKKVLNESTILIFPKTPEKSKQYEDLVVKTFFLNTLDAKKAVNLLRTMLQVRKVYVNEELNAIVVRDTSELVDVAGKIL EANDVPDAEVLLDVEVIEVSKRNIENFGLALSKYAVSLNTQTPGGGFLNDTFSRASVSSSTGTTIQGTAGSELLQTFSWN GYSGFMTVPSASYSFGKSITNAEVLANPKIRVKNREKSKFTVGTRVPITTTSTTGTTGGFSVNVQYVDVGVKLNAEPTIM LNNEVSIKLGLEVSSIIDKQTVGGTDSATTVVTIGTRNLDTVLNLKDGETSVIGGLIEDNKQKGKQKIFLLGDIPIIGPL LSNNSNDNQKRELILAITPRLVRSVTVPEPDLVSFWSGKEDDPSVVKPFASFELEPEFAIGQPKTVKQPAASPAPVPASV SAPAQRVAPLQPVPGSPAPTAAPQTTTSPEVKQSAAPAPGQQPAPPSTAQSQAVAPLPVPASPAAPAATVAAASAVPVAA APAPAVRGSLNISAPAAVNLGSQFKVEIRVSDVKGLLKAPFVLIYDPIFIDYVGAVEGTFLNRDGKPTSFNAQVDKAKGR VTITLARTGAEGIDGAGSLLTATFTAKNKGPASLGLQSVNFTDQANKPIDVVPYNTVVEVK >Mature_861_residues MRIIFKIIAFLSFFAFLSGCGAGLTAFSKGERLEREGKLDEAVIKYSEAVASNPEMNEYRMRLLKTSEEAALRHLSKGDE FIALKNYDAALVEYQAAVALDPSLQRAKQESDKLVRQKNSRTYFKEGQDFERGNKPREALQAYRKALDLDGQNKEAKEAL ERLLSTKKTRLEGYELNLKSTKPITLKFKDANLKDVFYIVTQLSGINFIFDDTIKDQKVTIYLENANFQQALDLLTNMNK LGKKVLNESTILIFPKTPEKSKQYEDLVVKTFFLNTLDAKKAVNLLRTMLQVRKVYVNEELNAIVVRDTSELVDVAGKIL EANDVPDAEVLLDVEVIEVSKRNIENFGLALSKYAVSLNTQTPGGGFLNDTFSRASVSSSTGTTIQGTAGSELLQTFSWN GYSGFMTVPSASYSFGKSITNAEVLANPKIRVKNREKSKFTVGTRVPITTTSTTGTTGGFSVNVQYVDVGVKLNAEPTIM LNNEVSIKLGLEVSSIIDKQTVGGTDSATTVVTIGTRNLDTVLNLKDGETSVIGGLIEDNKQKGKQKIFLLGDIPIIGPL LSNNSNDNQKRELILAITPRLVRSVTVPEPDLVSFWSGKEDDPSVVKPFASFELEPEFAIGQPKTVKQPAASPAPVPASV SAPAQRVAPLQPVPGSPAPTAAPQTTTSPEVKQSAAPAPGQQPAPPSTAQSQAVAPLPVPASPAAPAATVAAASAVPVAA APAPAVRGSLNISAPAAVNLGSQFKVEIRVSDVKGLLKAPFVLIYDPIFIDYVGAVEGTFLNRDGKPTSFNAQVDKAKGR VTITLARTGAEGIDGAGSLLTATFTAKNKGPASLGLQSVNFTDQANKPIDVVPYNTVVEVK
Specific function: Required for type IV pilus biogenesis and competence. Could function as a pore for exit of the pilus but also as a channel for entry of heme and antimicrobial agents and uptake of transforming DNA [H]
COG id: COG4796
COG function: function code U; Type II secretory pathway, component HofQ
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI1789793, Length=423, Percent_Identity=21.7494089834515, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI87082242, Length=298, Percent_Identity=25.1677852348993, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR013355 - InterPro: IPR011662 - InterPro: IPR004846 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N; PF07660 STN [H]
EC number: NA
Molecular weight: Translated: 92619; Mature: 92619
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIIFKIIAFLSFFAFLSGCGAGLTAFSKGERLEREGKLDEAVIKYSEAVASNPEMNEYR CHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHCCCHHHHHHHHHHHHCCCCCHHHHH MRLLKTSEEAALRHLSKGDEFIALKNYDAALVEYQAAVALDPSLQRAKQESDKLVRQKNS HHHHCCCHHHHHHHHCCCCCEEEEECCCCEEHEEEEHEEECHHHHHHHHHHHHHHHHCCC RTYFKEGQDFERGNKPREALQAYRKALDLDGQNKEAKEALERLLSTKKTRLEGYELNLKS CCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC TKPITLKFKDANLKDVFYIVTQLSGINFIFDDTIKDQKVTIYLENANFQQALDLLTNMNK CCEEEEEECCCCCCHHHHEEHHHCCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHH LGKKVLNESTILIFPKTPEKSKQYEDLVVKTFFLNTLDAKKAVNLLRTMLQVRKVYVNEE HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LNAIVVRDTSELVDVAGKILEANDVPDAEVLLDVEVIEVSKRNIENFGLALSKYAVSLNT CCEEEEECHHHHHHHHHHHEECCCCCCCEEEEEEEEEECCCCCHHHHCEEEEEEEEEEEC QTPGGGFLNDTFSRASVSSSTGTTIQGTAGSELLQTFSWNGYSGFMTVPSASYSFGKSIT CCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCEEECCCCCCHHCCCCC NAEVLANPKIRVKNREKSKFTVGTRVPITTTSTTGTTGGFSVNVQYVDVGVKLNAEPTIM CCEEEECCEEEEECCCCCEEEECCCCEEEECCCCCCCCCEEEEEEEEEEEEEECCCCEEE LNNEVSIKLGLEVSSIIDKQTVGGTDSATTVVTIGTRNLDTVLNLKDGETSVIGGLIEDN ECCEEEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCCCEECHHHHCC KQKGKQKIFLLGDIPIIGPLLSNNSNDNQKRELILAITPRLVRSVTVPEPDLVSFWSGKE CCCCCEEEEEEECCCEECHHHCCCCCCCCCEEEEEEECHHHHHCCCCCCCCHHHHCCCCC DDPSVVKPFASFELEPEFAIGQPKTVKQPAASPAPVPASVSAPAQRVAPLQPVPGSPAPT CCHHHHCHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC AAPQTTTSPEVKQSAAPAPGQQPAPPSTAQSQAVAPLPVPASPAAPAATVAAASAVPVAA CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC APAPAVRGSLNISAPAAVNLGSQFKVEIRVSDVKGLLKAPFVLIYDPIFIDYVGAVEGTF CCCCCCCCCEEECCCCEECCCCEEEEEEEEHHHHHHHHCCEEEEECHHHHHHHHCCCCEE LNRDGKPTSFNAQVDKAKGRVTITLARTGAEGIDGAGSLLTATFTAKNKGPASLGLQSVN ECCCCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHCEEECC FTDQANKPIDVVPYNTVVEVK CCCCCCCCEEEECCCEEEEEC >Mature Secondary Structure MRIIFKIIAFLSFFAFLSGCGAGLTAFSKGERLEREGKLDEAVIKYSEAVASNPEMNEYR CHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHCCCHHHHHHHHHHHHCCCCCHHHHH MRLLKTSEEAALRHLSKGDEFIALKNYDAALVEYQAAVALDPSLQRAKQESDKLVRQKNS HHHHCCCHHHHHHHHCCCCCEEEEECCCCEEHEEEEHEEECHHHHHHHHHHHHHHHHCCC RTYFKEGQDFERGNKPREALQAYRKALDLDGQNKEAKEALERLLSTKKTRLEGYELNLKS CCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC TKPITLKFKDANLKDVFYIVTQLSGINFIFDDTIKDQKVTIYLENANFQQALDLLTNMNK CCEEEEEECCCCCCHHHHEEHHHCCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHH LGKKVLNESTILIFPKTPEKSKQYEDLVVKTFFLNTLDAKKAVNLLRTMLQVRKVYVNEE HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LNAIVVRDTSELVDVAGKILEANDVPDAEVLLDVEVIEVSKRNIENFGLALSKYAVSLNT CCEEEEECHHHHHHHHHHHEECCCCCCCEEEEEEEEEECCCCCHHHHCEEEEEEEEEEEC QTPGGGFLNDTFSRASVSSSTGTTIQGTAGSELLQTFSWNGYSGFMTVPSASYSFGKSIT CCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCEEECCCCCCHHCCCCC NAEVLANPKIRVKNREKSKFTVGTRVPITTTSTTGTTGGFSVNVQYVDVGVKLNAEPTIM CCEEEECCEEEEECCCCCEEEECCCCEEEECCCCCCCCCEEEEEEEEEEEEEECCCCEEE LNNEVSIKLGLEVSSIIDKQTVGGTDSATTVVTIGTRNLDTVLNLKDGETSVIGGLIEDN ECCEEEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCCCEECHHHHCC KQKGKQKIFLLGDIPIIGPLLSNNSNDNQKRELILAITPRLVRSVTVPEPDLVSFWSGKE CCCCCEEEEEEECCCEECHHHCCCCCCCCCEEEEEEECHHHHHCCCCCCCCHHHHCCCCC DDPSVVKPFASFELEPEFAIGQPKTVKQPAASPAPVPASVSAPAQRVAPLQPVPGSPAPT CCHHHHCHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC AAPQTTTSPEVKQSAAPAPGQQPAPPSTAQSQAVAPLPVPASPAAPAATVAAASAVPVAA CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC APAPAVRGSLNISAPAAVNLGSQFKVEIRVSDVKGLLKAPFVLIYDPIFIDYVGAVEGTF CCCCCCCCCEEECCCCEECCCCEEEEEEEEHHHHHHHHCCEEEEECHHHHHHHHCCCCEE LNRDGKPTSFNAQVDKAKGRVTITLARTGAEGIDGAGSLLTATFTAKNKGPASLGLQSVN ECCCCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHCEEECC FTDQANKPIDVVPYNTVVEVK CCCCCCCCEEEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]