Click here to switch to the map view.

The map label for this gene is ppdD [C]

Identifier: 78223064

GI number: 78223064

Start: 2070218

End: 2070640

Strand: Reverse

Name: ppdD [C]

Synonym: Gmet_1857

Alternate gene names: 78223064

Gene position: 2070640-2070218 (Counterclockwise)

Preceding gene: 78223065

Following gene: 78223063

Centisome position: 51.8

GC content: 51.77

Gene sequence:

>423_bases
GTGCCGAGCTTCCGAAAAATGCTAACAAAAAGCAAAGGCTTTACGCTTGTGGAGTTGATGATTGTTGTGACCATCATCGG
CATCCTGGCCACCATTGCTGTGCCGAGCTACAAGTGGAGCCTCATCAAGGCGAGAGAGGCAGTGTTGCGGGAGAACCTCT
ACAGCATCCGAAGCAGCATAGACCAATTTTACGCCGACCAGGGGAAGTATCCCGATACGCTTCAAGATCTTGTCGACAAG
AAATATATCCACGGTTTACCGACGGATCCCTTTACCAGGAAAACTGACAGCTGGGAAACTATCGCCCCCCCGGCTCCGAC
TGGCGGGGCGGACGCCGGTAAACAGGAAACCGGTAATGTCTACGATGTCCATAGTGGTTCTGATCTGGTGGGAACTGACG
GGAAACCGTATAAAGAATGGTAA

Upstream 100 bases:

>100_bases
GAGCCCGATAGCACGACGTGGGACAATTCGGACGTGTATGACGTCTATTCCCTGAGCGAGGGTACGGCCATCGACGGGAC
AAAATACAAGGACTGGTAAC

Downstream 100 bases:

>100_bases
CGCGTTGCGGGTAACAACCGCACGGAGGCAGTGACGAGGAAAGAGGATACGATGATTCAGTTCCACAATGTTTTCCTGTC
GTATCAGAGCGACGCGGCAG

Product: N-terminal methylation

Products: NA

Alternate protein names: General Secretion Pathway Protein G; N-Terminal Methylation Site; Methylation; N-Terminal Methylation; Type II Secretion System Protein; General Secretion Pathway Transmembrane Protein; Secretion Protein; Pilus Assembly Protein; General Secretion Pathway GSPG-Like Transmembrane Protein; General Secretion Pathway GSPG-Like; GSPG-Related Protein; Type II Secretion System Pseudopilin OxpG; Pilin Domain-Containing Protein; General Secretion Pathway Protein; Fimbrial Protein Pilin; Prokaryotic N-Terminal Methylation Site

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MPSFRKMLTKSKGFTLVELMIVVTIIGILATIAVPSYKWSLIKAREAVLRENLYSIRSSIDQFYADQGKYPDTLQDLVDK
KYIHGLPTDPFTRKTDSWETIAPPAPTGGADAGKQETGNVYDVHSGSDLVGTDGKPYKEW

Sequences:

>Translated_140_residues
MPSFRKMLTKSKGFTLVELMIVVTIIGILATIAVPSYKWSLIKAREAVLRENLYSIRSSIDQFYADQGKYPDTLQDLVDK
KYIHGLPTDPFTRKTDSWETIAPPAPTGGADAGKQETGNVYDVHSGSDLVGTDGKPYKEW
>Mature_139_residues
PSFRKMLTKSKGFTLVELMIVVTIIGILATIAVPSYKWSLIKAREAVLRENLYSIRSSIDQFYADQGKYPDTLQDLVDKK
YIHGLPTDPFTRKTDSWETIAPPAPTGGADAGKQETGNVYDVHSGSDLVGTDGKPYKEW

Specific function: Not Yet Known. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15570; Mature: 15439

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSFRKMLTKSKGFTLVELMIVVTIIGILATIAVPSYKWSLIKAREAVLRENLYSIRSSI
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
DQFYADQGKYPDTLQDLVDKKYIHGLPTDPFTRKTDSWETIAPPAPTGGADAGKQETGNV
HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
YDVHSGSDLVGTDGKPYKEW
EEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PSFRKMLTKSKGFTLVELMIVVTIIGILATIAVPSYKWSLIKAREAVLRENLYSIRSSI
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
DQFYADQGKYPDTLQDLVDKKYIHGLPTDPFTRKTDSWETIAPPAPTGGADAGKQETGNV
HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
YDVHSGSDLVGTDGKPYKEW
EEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA