| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is recG [H]
Identifier: 78222986
GI number: 78222986
Start: 1992850
End: 1995153
Strand: Direct
Name: recG [H]
Synonym: Gmet_1777
Alternate gene names: 78222986
Gene position: 1992850-1995153 (Clockwise)
Preceding gene: 78222985
Following gene: 78222987
Centisome position: 49.85
GC content: 62.37
Gene sequence:
>2304_bases ATGCCGGTTGTTACTCTTGCCGAGAACGGTCAGCTAGCCATACCCGACGACCTTCTGAAGGATCTGGGAATCAAGCCGGG CGATCCGGTCTTACTGGAAAAGACATCGGGCGGCATCCTCCTGTCCCGTCATGCCCCTCCTTCTCCTGGTGCGGTCCAGA GCCGACTCCATGAGTCCATCAACCGCAAGAACCTGGAAACTCCCATTCAGTTCATAAAAGGGGTCGGTCCGAAGCTGGCG GAGACCCTTGGCAAGAAGGGGATTGCCACGGTGGAGGATGCCCTCTATCTTCTTCCCAACCGTTACGAGGACCGCCGCCA AGTGGTGCCCATTGCAAGGCTTTGCCCCGGAGTGACGAGTGTCTTTTCCGGCGAGGTGATTACCGCTGACGTGGTGAGCA CCAAGGGGGGGCGTCGCTTCTTCGAAGTGGTGGTGCGGGATGCAAGCGGCACCATCTCCTTCAAATGGTTCAATTTTAAT CCCGCCTTTCTCAAGAAGACCTGGAAGGAGGGGAGGCGGGGCATATTTACCGGACTGGTCTCTCAGTTTGGACTCCAGCG CGAGGTGCATCATCCGGACGCCGAATGGCTGGCCGAGGGAGAAACGGTGGCATCTGTCATGGCCCGGGATCCGGTCAGTT TCGGCCGCGTGGTGCCGGTCTACCCCCTCACCGAGGGACTCCACCAGAAGACTCTGCGGAAGGTAATGAAAGGGGTAGTG GACCAGTATGCGTCCTGCGTGGAGAGCGCCTTGCCGCTGGAAGTGGCGGGGCGCCAGGGACTCCTGCCCCTCTCTGACGC GCTCCGACGGGTCCACTTCCCCGACAGCGATGCCGATCCCCGGGGGCTTGAGGAAGGAAAGGATCCCGCCAATCGCACCC TGGTTTTCGACGAGTTCTTTTTCCTTGAGCTGGGGCTGGCCATGAAAAAACGTGGCGTAACCCTCGAATCGGGAATCGCC TTCACTGTCAGCCACACGTACACGAAGCCGCTCCTGAAACTCCTCCCCTTCTCGCTGACCGGGGCCCAGCGGCGGGTCCT GGCCGAGATCAAGGAGGATATGATGGCTCCGCACCCCATGCACCGCCTGGTACAGGGGGATGTGGGATGCGGCAAGACCC TCGTGGCGCTCATGGCGGCCCTGGTGGCGGTGGAGAACGGCTACCAGGTGGCGATCATGGCACCCACCGAGATCCTTGCC GAGCAGCATTATCTGAACATTCACCGCTGGTGCGACGAACTGGGCGTTTCGGTGACGCTCGTTACCTCGTCGTTGAAGGG GAAGGCGAAGAAGGATGCCCTGGAACGGGTAGCCGGTGGGGAGGCACAGATCGTCATCGGCACCCATGCGGTGATCCAGG ACAAGGTGGAGTTCCATCGGCTTGGCCTCGGCATCGTGGACGAGCAGCACCGTTTCGGCGTCCTGCAGCGGGGGCTTCTG CGGAAAAAAGGTGAGAACCCCGACATCCTTGTCATGACCGCCACCCCCATTCCCCGGACCCTTGCCATGACTGTTTTCGG CGACCTTTCGCTGTCGGTCATCGACGAGTTGCCGCCGGGGCGGACCCCCATCGAGACGCGGATCTGTTTCGAGTCACGCC GGAAGCAGGTCTACGGCATCATCCGCGACGAGGTGACCAAGGGGCATCAGGCGTACGTCATCTACCCCCTGGTAGAGGAG TCGGAGAAGTCGGATCTCAAGGCCGCCACCCAGATGGCCGAGCACCTGGCCAACGACATCTTCCCGGAGTTGAGGCTCGG CATCCTTCATGGCCGGATGAAGCCCGAGGAGAAGGAGGCGGTGATGCGCTCCTTCAAGGCGCGGGAGATCGATATCCTGG TGGCCACCACAGTCATCGAGGTGGGGATCGACGTCCCCAATGCCACGGTGATGGTCATCGAGCATGCCGAGCGGTTCGGC CTGTCGCAACTCCACCAGCTGCGGGGAAGGGTGGGGCGGGGGAGCGAGAAATCCCGCTGCATCCTCATGGCCGGCGAGCG CCTTTCCGAGGACGCCGAGAAGCGGCTCCGGGTCATGGAGTCCACCACCGACGGTTTCAGGATTGCCGAGGCCGATCTGG AGATCCGGGGCCCCGGCGATTTCCTCGGCACCCGCCAGGCGGGAATTCCCGATTTTCGCGTCGCCAACATCCTGCGGGAC GGTCGTATCCTGGAAGAGGCCCGACAGGAGGCCTTCGCTGTGGCAGAGGTGGATCCGGAGCTGCGGTTGCCCCGGCACGA TAAGCTCCGGACGGAGCTGGCTCGGCGTTGGGGAGGCCGGCTTGAACTGGCGGGAATCGCATAA
Upstream 100 bases:
>100_bases CGAGGTCCTGAAAGACCTGAACGCTATCGGCCAGTAAACCTATGCCACAAGGGCGAAGGGGGAAACCTCTTCGCCCTTCG TCTATCCGCAGCGAGGAGCC
Downstream 100 bases:
>100_bases AAAAACAGTGCTGCACCAATTTCAGAATGGAGGAAATATGTCTGAATTCATCAACGTAACCGTAGTCCGGGAGGCAAACG TATTCTTCAATGGCGGCGTC
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 767; Mature: 766
Protein sequence:
>767_residues MPVVTLAENGQLAIPDDLLKDLGIKPGDPVLLEKTSGGILLSRHAPPSPGAVQSRLHESINRKNLETPIQFIKGVGPKLA ETLGKKGIATVEDALYLLPNRYEDRRQVVPIARLCPGVTSVFSGEVITADVVSTKGGRRFFEVVVRDASGTISFKWFNFN PAFLKKTWKEGRRGIFTGLVSQFGLQREVHHPDAEWLAEGETVASVMARDPVSFGRVVPVYPLTEGLHQKTLRKVMKGVV DQYASCVESALPLEVAGRQGLLPLSDALRRVHFPDSDADPRGLEEGKDPANRTLVFDEFFFLELGLAMKKRGVTLESGIA FTVSHTYTKPLLKLLPFSLTGAQRRVLAEIKEDMMAPHPMHRLVQGDVGCGKTLVALMAALVAVENGYQVAIMAPTEILA EQHYLNIHRWCDELGVSVTLVTSSLKGKAKKDALERVAGGEAQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRGLL RKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPIETRICFESRRKQVYGIIRDEVTKGHQAYVIYPLVEE SEKSDLKAATQMAEHLANDIFPELRLGILHGRMKPEEKEAVMRSFKAREIDILVATTVIEVGIDVPNATVMVIEHAERFG LSQLHQLRGRVGRGSEKSRCILMAGERLSEDAEKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDFRVANILRD GRILEEARQEAFAVAEVDPELRLPRHDKLRTELARRWGGRLELAGIA
Sequences:
>Translated_767_residues MPVVTLAENGQLAIPDDLLKDLGIKPGDPVLLEKTSGGILLSRHAPPSPGAVQSRLHESINRKNLETPIQFIKGVGPKLA ETLGKKGIATVEDALYLLPNRYEDRRQVVPIARLCPGVTSVFSGEVITADVVSTKGGRRFFEVVVRDASGTISFKWFNFN PAFLKKTWKEGRRGIFTGLVSQFGLQREVHHPDAEWLAEGETVASVMARDPVSFGRVVPVYPLTEGLHQKTLRKVMKGVV DQYASCVESALPLEVAGRQGLLPLSDALRRVHFPDSDADPRGLEEGKDPANRTLVFDEFFFLELGLAMKKRGVTLESGIA FTVSHTYTKPLLKLLPFSLTGAQRRVLAEIKEDMMAPHPMHRLVQGDVGCGKTLVALMAALVAVENGYQVAIMAPTEILA EQHYLNIHRWCDELGVSVTLVTSSLKGKAKKDALERVAGGEAQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRGLL RKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPIETRICFESRRKQVYGIIRDEVTKGHQAYVIYPLVEE SEKSDLKAATQMAEHLANDIFPELRLGILHGRMKPEEKEAVMRSFKAREIDILVATTVIEVGIDVPNATVMVIEHAERFG LSQLHQLRGRVGRGSEKSRCILMAGERLSEDAEKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDFRVANILRD GRILEEARQEAFAVAEVDPELRLPRHDKLRTELARRWGGRLELAGIA >Mature_766_residues PVVTLAENGQLAIPDDLLKDLGIKPGDPVLLEKTSGGILLSRHAPPSPGAVQSRLHESINRKNLETPIQFIKGVGPKLAE TLGKKGIATVEDALYLLPNRYEDRRQVVPIARLCPGVTSVFSGEVITADVVSTKGGRRFFEVVVRDASGTISFKWFNFNP AFLKKTWKEGRRGIFTGLVSQFGLQREVHHPDAEWLAEGETVASVMARDPVSFGRVVPVYPLTEGLHQKTLRKVMKGVVD QYASCVESALPLEVAGRQGLLPLSDALRRVHFPDSDADPRGLEEGKDPANRTLVFDEFFFLELGLAMKKRGVTLESGIAF TVSHTYTKPLLKLLPFSLTGAQRRVLAEIKEDMMAPHPMHRLVQGDVGCGKTLVALMAALVAVENGYQVAIMAPTEILAE QHYLNIHRWCDELGVSVTLVTSSLKGKAKKDALERVAGGEAQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRGLLR KKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPIETRICFESRRKQVYGIIRDEVTKGHQAYVIYPLVEES EKSDLKAATQMAEHLANDIFPELRLGILHGRMKPEEKEAVMRSFKAREIDILVATTVIEVGIDVPNATVMVIEHAERFGL SQLHQLRGRVGRGSEKSRCILMAGERLSEDAEKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDFRVANILRDG RILEEARQEAFAVAEVDPELRLPRHDKLRTELARRWGGRLELAGIA
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=696, Percent_Identity=44.9712643678161, Blast_Score=538, Evalue=1e-154, Organism=Escherichia coli, GI1787357, Length=398, Percent_Identity=40.9547738693467, Blast_Score=273, Evalue=3e-74,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 84776; Mature: 84645
Theoretical pI: Translated: 7.74; Mature: 7.74
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVVTLAENGQLAIPDDLLKDLGIKPGDPVLLEKTSGGILLSRHAPPSPGAVQSRLHESI CCEEEEECCCCEECCHHHHHHCCCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHH NRKNLETPIQFIKGVGPKLAETLGKKGIATVEDALYLLPNRYEDRRQVVPIARLCPGVTS HHCCCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHCCCHHHHCCCHHH VFSGEVITADVVSTKGGRRFFEVVVRDASGTISFKWFNFNPAFLKKTWKEGRRGIFTGLV HHCCCEEEEEHHCCCCCHHEEHHHEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH SQFGLQREVHHPDAEWLAEGETVASVMARDPVSFGRVVPVYPLTEGLHQKTLRKVMKGVV HHHCCCHHCCCCCHHHHHCCHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH DQYASCVESALPLEVAGRQGLLPLSDALRRVHFPDSDADPRGLEEGKDPANRTLVFDEFF HHHHHHHHHCCCCEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHH FLELGLAMKKRGVTLESGIAFTVSHTYTKPLLKLLPFSLTGAQRRVLAEIKEDMMAPHPM HHHHHHHHHHCCCEEECCEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHH HRLVQGDVGCGKTLVALMAALVAVENGYQVAIMAPTEILAEQHYLNIHRWCDELGVSVTL HHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCEEEE VTSSLKGKAKKDALERVAGGEAQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRGLL EECCCCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHH RKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPIETRICFESRRKQVYGI HHCCCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH IRDEVTKGHQAYVIYPLVEESEKSDLKAATQMAEHLANDIFPELRLGILHGRMKPEEKEA HHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH VMRSFKAREIDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGSEKSRC HHHHHCCCCEEEEEEEEHHHHCCCCCCCEEEEEECHHHCCHHHHHHHHHCCCCCCCCCCE ILMAGERLSEDAEKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDFRVANILRD EEEECCHHHHHHHHHHHHHHCCCCCCEEEECCEEEECCCCCCCCCCCCCCCHHHHHHHHC GRILEEARQEAFAVAEVDPELRLPRHDKLRTELARRWGGRLELAGIA CHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCC >Mature Secondary Structure PVVTLAENGQLAIPDDLLKDLGIKPGDPVLLEKTSGGILLSRHAPPSPGAVQSRLHESI CEEEEECCCCEECCHHHHHHCCCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHH NRKNLETPIQFIKGVGPKLAETLGKKGIATVEDALYLLPNRYEDRRQVVPIARLCPGVTS HHCCCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHCCCHHHHCCCHHH VFSGEVITADVVSTKGGRRFFEVVVRDASGTISFKWFNFNPAFLKKTWKEGRRGIFTGLV HHCCCEEEEEHHCCCCCHHEEHHHEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH SQFGLQREVHHPDAEWLAEGETVASVMARDPVSFGRVVPVYPLTEGLHQKTLRKVMKGVV HHHCCCHHCCCCCHHHHHCCHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH DQYASCVESALPLEVAGRQGLLPLSDALRRVHFPDSDADPRGLEEGKDPANRTLVFDEFF HHHHHHHHHCCCCEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHH FLELGLAMKKRGVTLESGIAFTVSHTYTKPLLKLLPFSLTGAQRRVLAEIKEDMMAPHPM HHHHHHHHHHCCCEEECCEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHH HRLVQGDVGCGKTLVALMAALVAVENGYQVAIMAPTEILAEQHYLNIHRWCDELGVSVTL HHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCEEEE VTSSLKGKAKKDALERVAGGEAQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRGLL EECCCCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHH RKKGENPDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPIETRICFESRRKQVYGI HHCCCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH IRDEVTKGHQAYVIYPLVEESEKSDLKAATQMAEHLANDIFPELRLGILHGRMKPEEKEA HHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH VMRSFKAREIDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGSEKSRC HHHHHCCCCEEEEEEEEHHHHCCCCCCCEEEEEECHHHCCHHHHHHHHHCCCCCCCCCCE ILMAGERLSEDAEKRLRVMESTTDGFRIAEADLEIRGPGDFLGTRQAGIPDFRVANILRD EEEECCHHHHHHHHHHHHHHCCCCCCEEEECCEEEECCCCCCCCCCCCCCCHHHHHHHHC GRILEEARQEAFAVAEVDPELRLPRHDKLRTELARRWGGRLELAGIA CHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]