| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is lepA [H]
Identifier: 78222975
GI number: 78222975
Start: 1980477
End: 1982366
Strand: Direct
Name: lepA [H]
Synonym: Gmet_1766
Alternate gene names: 78222975
Gene position: 1980477-1982366 (Clockwise)
Preceding gene: 78222972
Following gene: 78222976
Centisome position: 49.54
GC content: 56.98
Gene sequence:
>1890_bases ATGCTGGATGTATCCGGAGAATACCCTTTACAAAATCTCCCTCTTTCGGCTATTGTTCTACGGTTACACTCATTTAACGA CAAGGTGTCTATGAAGATCGAAAATATCCGCAATTTTTCAATAATTGCTCATATCGACCACGGCAAGTCCACCCTTGCAG ACCGGCTCCTGGAGTATACCGGTGCCCTTTCCGAGCGAGAGAGGCAGGATCAGTTCCTCGACAAGATGGATCTGGAGCGG GAGCGCGGGATAACCATCAAGGCCCAGACCGTCCGCCTGAATTACCGGGCCGACGACGGGAAGGATTACGTGCTGAACCT GATCGATACGCCGGGACATGTGGACTTCACCTACGAAGTTTCCCGCTCTCTCGCTGCCTGCGAGGGGGGACTTCTGGTGG TGGATGCCTCTCAGGGGGTTGAGGCCCAGACCCTCGCCAATGTCTATCTGGCCATCGACAACAACCTTGAGGTCTTTCCC GTTCTGAACAAAATCGACCTCCCGGCGGCGGAACCGGAGCGGGTCAAGCACGAGATCGAGGAGATCATCGGCCTGGACGC CCACGATGCGGTGCTTGCCAGCGCCAAAGAAGGGATCGGGACCCGGGAGATCCTGGAAGAGATCGTAAAAAAGATCCCTC CCCCGGAGGGAGACCCGGCCGCGCCGCTCAAGGCTCTGCTCTTTGATTCGTGGTATGACCAGTACCAGGGAGTCATTATT CTGGCGAGGCTCATCGATGGCATCCTCAAGAAGGGTGATAAGATCCAGCTCGTCTCCACCGGACGTAGCTACGAGGCCCT TAAAGTTGGTGTTTTCGCCCCGGTGATGCGGGAGGTGCCCCAGTTGTCGGCCGGTGAGGTCGGCTTTGTCATTGCCGGCA TCAAGGACGTTGCCGACGCCAAGATCGGCGATACCGTCACCCATACCCTCAAGCCCTGTACGACCCCCCTCGGCGGTTTC AAGGAAGTGAAGCCCATGGTCTTCTCGGGGCTCTACCCCATCGACACTTCGCAATACGAACAGCTTCGCGATGCGTTGGC CAAACTCAAACTCAATGATTCCTCCTTCTCCTACGAGCCGGAGACATCACTGGCGCTGGGATTCGGCTTCCGGTGCGGCT TTCTGGGGCTTCTCCACATGGAGATCATCCAGGAGCGGCTGGAGCGGGAGTTCAATCTCGACCTCATCACCACCGCGCCA ACGGTCGTTTACAGGGTCCACCGGATCAAAGGCGACATGATCTCCATCGAGAGTGCCAACCAACTCCCCCCGACCCAGGA GATCGACTATGTAGAGGAGCCGTTCATCCTTGCCTCCATCCACACCCCCAATGAGTTCGTCGGCGGAATTCTTGCCCTGT GCGAGGAGAAGCGCGGGGTGCAGCGGGAGATCAAGTACCTGACCCCGACGCGGGTCATGATCATCTACGAACTCCCCCTG AACGAGGTGGTGCTCGATTTTTACGACCGGCTCAAGTCCATCACCAAGGGGTATGCCTCCCTTGATTACGAACATCTGGA CTATCGCCGGAGCGAGCTCGTGCGGATGAACATTATGATCAACGGCGAAGTGGTGGACGCACTCTCACTCATCATTCACA GGGACAAGGCATACTATCGGGGCCGTGACCTCGTCTCCAAGATGAAGGAGCTGATCCCCCGCCAGATGTTCGAGGTAGCT ATCCAGGCTGCCATTGGCGCAAAGGTCATTGCCCGGGAAACCGTCAAGGCCCTGCGCAAGGATGTCCTCGCCAAGTGTTA TGGCGGCGACATCACCCGCAAGCGGAAACTCCTCGAAAAGCAGAAGGAAGGGAAGAAACGGATGAAGAACGTGGGAAACG TGGAGTTGCCCCAGGAGGCATTTCTCGCCATTCTCAAGGTGGAAGAGTAA
Upstream 100 bases:
>100_bases CCGGTGGCAGCAAATCGCCAAATCAATAATGACGCCTAATCTTGACATTTGTATATCACAGCTCCAGGGGCTCGGCAATC GCAGAAGTGGCGGAGAATTA
Downstream 100 bases:
>100_bases GGGTTTACCCATAGAACATTCACCGAAAAGGAACCGCAATGGACTACAAAAATTCTCAATACGGATCGAACAACGCCATG GGCGAAAGGCCGGCAGCAGA
Product: GTP-binding protein LepA
Products: NA
Alternate protein names: EF-4; Ribosomal back-translocase LepA [H]
Number of amino acids: Translated: 629; Mature: 629
Protein sequence:
>629_residues MLDVSGEYPLQNLPLSAIVLRLHSFNDKVSMKIENIRNFSIIAHIDHGKSTLADRLLEYTGALSERERQDQFLDKMDLER ERGITIKAQTVRLNYRADDGKDYVLNLIDTPGHVDFTYEVSRSLAACEGGLLVVDASQGVEAQTLANVYLAIDNNLEVFP VLNKIDLPAAEPERVKHEIEEIIGLDAHDAVLASAKEGIGTREILEEIVKKIPPPEGDPAAPLKALLFDSWYDQYQGVII LARLIDGILKKGDKIQLVSTGRSYEALKVGVFAPVMREVPQLSAGEVGFVIAGIKDVADAKIGDTVTHTLKPCTTPLGGF KEVKPMVFSGLYPIDTSQYEQLRDALAKLKLNDSSFSYEPETSLALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAP TVVYRVHRIKGDMISIESANQLPPTQEIDYVEEPFILASIHTPNEFVGGILALCEEKRGVQREIKYLTPTRVMIIYELPL NEVVLDFYDRLKSITKGYASLDYEHLDYRRSELVRMNIMINGEVVDALSLIIHRDKAYYRGRDLVSKMKELIPRQMFEVA IQAAIGAKVIARETVKALRKDVLAKCYGGDITRKRKLLEKQKEGKKRMKNVGNVELPQEAFLAILKVEE
Sequences:
>Translated_629_residues MLDVSGEYPLQNLPLSAIVLRLHSFNDKVSMKIENIRNFSIIAHIDHGKSTLADRLLEYTGALSERERQDQFLDKMDLER ERGITIKAQTVRLNYRADDGKDYVLNLIDTPGHVDFTYEVSRSLAACEGGLLVVDASQGVEAQTLANVYLAIDNNLEVFP VLNKIDLPAAEPERVKHEIEEIIGLDAHDAVLASAKEGIGTREILEEIVKKIPPPEGDPAAPLKALLFDSWYDQYQGVII LARLIDGILKKGDKIQLVSTGRSYEALKVGVFAPVMREVPQLSAGEVGFVIAGIKDVADAKIGDTVTHTLKPCTTPLGGF KEVKPMVFSGLYPIDTSQYEQLRDALAKLKLNDSSFSYEPETSLALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAP TVVYRVHRIKGDMISIESANQLPPTQEIDYVEEPFILASIHTPNEFVGGILALCEEKRGVQREIKYLTPTRVMIIYELPL NEVVLDFYDRLKSITKGYASLDYEHLDYRRSELVRMNIMINGEVVDALSLIIHRDKAYYRGRDLVSKMKELIPRQMFEVA IQAAIGAKVIARETVKALRKDVLAKCYGGDITRKRKLLEKQKEGKKRMKNVGNVELPQEAFLAILKVEE >Mature_629_residues MLDVSGEYPLQNLPLSAIVLRLHSFNDKVSMKIENIRNFSIIAHIDHGKSTLADRLLEYTGALSERERQDQFLDKMDLER ERGITIKAQTVRLNYRADDGKDYVLNLIDTPGHVDFTYEVSRSLAACEGGLLVVDASQGVEAQTLANVYLAIDNNLEVFP VLNKIDLPAAEPERVKHEIEEIIGLDAHDAVLASAKEGIGTREILEEIVKKIPPPEGDPAAPLKALLFDSWYDQYQGVII LARLIDGILKKGDKIQLVSTGRSYEALKVGVFAPVMREVPQLSAGEVGFVIAGIKDVADAKIGDTVTHTLKPCTTPLGGF KEVKPMVFSGLYPIDTSQYEQLRDALAKLKLNDSSFSYEPETSLALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAP TVVYRVHRIKGDMISIESANQLPPTQEIDYVEEPFILASIHTPNEFVGGILALCEEKRGVQREIKYLTPTRVMIIYELPL NEVVLDFYDRLKSITKGYASLDYEHLDYRRSELVRMNIMINGEVVDALSLIIHRDKAYYRGRDLVSKMKELIPRQMFEVA IQAAIGAKVIARETVKALRKDVLAKCYGGDITRKRKLLEKQKEGKKRMKNVGNVELPQEAFLAILKVEE
Specific function: Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- transloc
COG id: COG0481
COG function: function code M; Membrane GTPase LepA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. LepA subfamily [H]
Homologues:
Organism=Homo sapiens, GI157426893, Length=631, Percent_Identity=51.6640253565769, Blast_Score=665, Evalue=0.0, Organism=Homo sapiens, GI94966754, Length=133, Percent_Identity=45.1127819548872, Blast_Score=117, Evalue=3e-26, Organism=Homo sapiens, GI25306283, Length=164, Percent_Identity=43.2926829268293, Blast_Score=109, Evalue=9e-24, Organism=Homo sapiens, GI25306287, Length=164, Percent_Identity=42.6829268292683, Blast_Score=109, Evalue=9e-24, Organism=Homo sapiens, GI19923640, Length=164, Percent_Identity=43.2926829268293, Blast_Score=109, Evalue=9e-24, Organism=Homo sapiens, GI4503483, Length=147, Percent_Identity=41.4965986394558, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI18390331, Length=160, Percent_Identity=37.5, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI310132016, Length=129, Percent_Identity=38.7596899224806, Blast_Score=99, Evalue=2e-20, Organism=Homo sapiens, GI310110807, Length=129, Percent_Identity=38.7596899224806, Blast_Score=99, Evalue=2e-20, Organism=Homo sapiens, GI310123363, Length=129, Percent_Identity=38.7596899224806, Blast_Score=99, Evalue=2e-20, Organism=Homo sapiens, GI217272894, Length=163, Percent_Identity=36.1963190184049, Blast_Score=93, Evalue=6e-19, Organism=Homo sapiens, GI217272892, Length=163, Percent_Identity=36.1963190184049, Blast_Score=93, Evalue=7e-19, Organism=Homo sapiens, GI53729339, Length=277, Percent_Identity=25.6317689530686, Blast_Score=71, Evalue=3e-12, Organism=Homo sapiens, GI53729337, Length=277, Percent_Identity=25.6317689530686, Blast_Score=71, Evalue=3e-12, Organism=Homo sapiens, GI94966752, Length=132, Percent_Identity=31.0606060606061, Blast_Score=68, Evalue=3e-11, Organism=Homo sapiens, GI34147630, Length=255, Percent_Identity=27.4509803921569, Blast_Score=66, Evalue=9e-11, Organism=Escherichia coli, GI1788922, Length=595, Percent_Identity=61.8487394957983, Blast_Score=733, Evalue=0.0, Organism=Escherichia coli, GI48994988, Length=510, Percent_Identity=29.2156862745098, Blast_Score=166, Evalue=6e-42, Organism=Escherichia coli, GI1789738, Length=211, Percent_Identity=33.6492890995261, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1790835, Length=151, Percent_Identity=31.1258278145695, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1789559, Length=230, Percent_Identity=29.5652173913043, Blast_Score=69, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17557151, Length=612, Percent_Identity=42.483660130719, Blast_Score=496, Evalue=1e-140, Organism=Caenorhabditis elegans, GI17556745, Length=457, Percent_Identity=27.3522975929978, Blast_Score=119, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17533571, Length=146, Percent_Identity=39.7260273972603, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17506493, Length=156, Percent_Identity=37.1794871794872, Blast_Score=97, Evalue=4e-20, Organism=Caenorhabditis elegans, GI71988811, Length=134, Percent_Identity=37.3134328358209, Blast_Score=92, Evalue=7e-19, Organism=Caenorhabditis elegans, GI71988819, Length=134, Percent_Identity=37.3134328358209, Blast_Score=92, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17552882, Length=133, Percent_Identity=37.593984962406, Blast_Score=90, Evalue=5e-18, Organism=Caenorhabditis elegans, GI25141371, Length=287, Percent_Identity=26.8292682926829, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17556456, Length=258, Percent_Identity=31.0077519379845, Blast_Score=70, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6323320, Length=602, Percent_Identity=47.5083056478405, Blast_Score=557, Evalue=1e-159, Organism=Saccharomyces cerevisiae, GI6324707, Length=160, Percent_Identity=39.375, Blast_Score=110, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6320593, Length=160, Percent_Identity=39.375, Blast_Score=110, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6323098, Length=184, Percent_Identity=36.4130434782609, Blast_Score=107, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6322359, Length=115, Percent_Identity=41.7391304347826, Blast_Score=98, Evalue=3e-21, Organism=Saccharomyces cerevisiae, GI6324166, Length=141, Percent_Identity=39.7163120567376, Blast_Score=90, Evalue=9e-19, Organism=Saccharomyces cerevisiae, GI6324761, Length=281, Percent_Identity=29.1814946619217, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI78706572, Length=604, Percent_Identity=46.523178807947, Blast_Score=572, Evalue=1e-163, Organism=Drosophila melanogaster, GI24582462, Length=161, Percent_Identity=39.7515527950311, Blast_Score=110, Evalue=4e-24, Organism=Drosophila melanogaster, GI28574573, Length=138, Percent_Identity=42.7536231884058, Blast_Score=103, Evalue=4e-22, Organism=Drosophila melanogaster, GI24585711, Length=151, Percent_Identity=37.7483443708609, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24585713, Length=151, Percent_Identity=37.7483443708609, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24585709, Length=151, Percent_Identity=37.7483443708609, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI221458488, Length=149, Percent_Identity=41.6107382550336, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI21357743, Length=160, Percent_Identity=35.625, Blast_Score=94, Evalue=4e-19, Organism=Drosophila melanogaster, GI19921738, Length=278, Percent_Identity=25.8992805755396, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI281363316, Length=301, Percent_Identity=26.2458471760797, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI17864358, Length=301, Percent_Identity=26.2458471760797, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI28572034, Length=223, Percent_Identity=30.9417040358744, Blast_Score=68, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR006297 - InterPro: IPR013842 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000640 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; PF06421 LepA_C [H]
EC number: NA
Molecular weight: Translated: 70612; Mature: 70612
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDVSGEYPLQNLPLSAIVLRLHSFNDKVSMKIENIRNFSIIAHIDHGKSTLADRLLEYT CCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHHHHH GALSERERQDQFLDKMDLERERGITIKAQTVRLNYRADDGKDYVLNLIDTPGHVDFTYEV CCHHHHHHHHHHHHHHCCHHHCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCEEEEHHH SRSLAACEGGLLVVDASQGVEAQTLANVYLAIDNNLEVFPVLNKIDLPAAEPERVKHEIE HHHHHHCCCCEEEEECCCCCCHHHEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHH EIIGLDAHDAVLASAKEGIGTREILEEIVKKIPPPEGDPAAPLKALLFDSWYDQYQGVII HHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHH LARLIDGILKKGDKIQLVSTGRSYEALKVGVFAPVMREVPQLSAGEVGFVIAGIKDVADA HHHHHHHHHCCCCEEEEEECCCCCCCEEEHHHHHHHHHCCCCCCCCCEEEEECHHHHHCC KIGDTVTHTLKPCTTPLGGFKEVKPMVFSGLYPIDTSQYEQLRDALAKLKLNDSSFSYEP CCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCC ETSLALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPTVVYRVHRIKGDMISIESAN CCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCEEEECCCC QLPPTQEIDYVEEPFILASIHTPNEFVGGILALCEEKRGVQREIKYLTPTRVMIIYELPL CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCH NEVVLDFYDRLKSITKGYASLDYEHLDYRRSELVRMNIMINGEVVDALSLIIHRDKAYYR HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEEEEEEECCHHHHHHHHHHHCCHHHHC GRDLVSKMKELIPRQMFEVAIQAAIGAKVIARETVKALRKDVLAKCYGGDITRKRKLLEK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH QKEGKKRMKNVGNVELPQEAFLAILKVEE HHHHHHHHHCCCCCCCCHHHHEEEEEECC >Mature Secondary Structure MLDVSGEYPLQNLPLSAIVLRLHSFNDKVSMKIENIRNFSIIAHIDHGKSTLADRLLEYT CCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHHHHH GALSERERQDQFLDKMDLERERGITIKAQTVRLNYRADDGKDYVLNLIDTPGHVDFTYEV CCHHHHHHHHHHHHHHCCHHHCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCEEEEHHH SRSLAACEGGLLVVDASQGVEAQTLANVYLAIDNNLEVFPVLNKIDLPAAEPERVKHEIE HHHHHHCCCCEEEEECCCCCCHHHEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHH EIIGLDAHDAVLASAKEGIGTREILEEIVKKIPPPEGDPAAPLKALLFDSWYDQYQGVII HHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHH LARLIDGILKKGDKIQLVSTGRSYEALKVGVFAPVMREVPQLSAGEVGFVIAGIKDVADA HHHHHHHHHCCCCEEEEEECCCCCCCEEEHHHHHHHHHCCCCCCCCCEEEEECHHHHHCC KIGDTVTHTLKPCTTPLGGFKEVKPMVFSGLYPIDTSQYEQLRDALAKLKLNDSSFSYEP CCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCC ETSLALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPTVVYRVHRIKGDMISIESAN CCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCEEEECCCC QLPPTQEIDYVEEPFILASIHTPNEFVGGILALCEEKRGVQREIKYLTPTRVMIIYELPL CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCH NEVVLDFYDRLKSITKGYASLDYEHLDYRRSELVRMNIMINGEVVDALSLIIHRDKAYYR HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEEEEEEECCHHHHHHHHHHHCCHHHHC GRDLVSKMKELIPRQMFEVAIQAAIGAKVIARETVKALRKDVLAKCYGGDITRKRKLLEK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH QKEGKKRMKNVGNVELPQEAFLAILKVEE HHHHHHHHHCCCCCCCCHHHHEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA