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The map label for this gene is ycdC [C]

Identifier: 78222940

GI number: 78222940

Start: 1948299

End: 1948898

Strand: Direct

Name: ycdC [C]

Synonym: Gmet_1731

Alternate gene names: 78222940

Gene position: 1948299-1948898 (Clockwise)

Preceding gene: 78222936

Following gene: 78222942

Centisome position: 48.74

GC content: 58.33

Gene sequence:

>600_bases
ATGACGAGACCGGACTGCCGCAGCAAATTGATGGAAGTGGGGACACAGCTCTTTGCCGAACGGGGATTGAACGGCGTCAG
CATCAGGGAGCTGTCCCACGGGGCCGGGGCCAGCATCTCCATGGTTTCCTACTATTTCGGCGGAAAGGAAGGGCTGTATT
CGGCGGTGTTGCAGGAGCAGTTTGCCTGCTTTGACCAGATCGGGGAAATCATGGAGCAGCATGCAGGCCCCGTGGACAAG
ATCGAGGCCTACATCCGCTGGACCATCCAGCGGCACCGGAACAACCCCCATTTGCTCCGGTTCTACACCAGCGAGCTCAC
CAACCCAACTTCCTACTTCCCCCGGATCGTTGCGCCGGCAATCGGCAAGGTCATACGGATTCTCGTGAAAGTTGTCGAGG
AAGGGATCCGCGAGGGGGTGTTCAGGCAGGATGCCCACGCCGTTAATGCGGCGCTGGCCCTTGCGGGCATGGTCAACTAC
TATTTTCTCAGCACCCTTGCCACTGAAGACCTGATTAGCCATTCACCCGAGCAGGATGAGCAACTTATTCACCAGTACCG
GGAGATTTTCACCCGCGGCATTTTGGCTCCCGCGTCGTAG

Upstream 100 bases:

>100_bases
GGCGCAATAATTTATGCAGATGTCGTGTCAATTAAATTGGCTTTAGAAAGGGACTTTGCTACTCTTTGCGGCACTCACAT
CAACACGGGTAGGGAGTGAA

Downstream 100 bases:

>100_bases
CTGCAGAGAATTACCGCCAGCGGGTTCTGAGCCGGGTCAGTTCGCGGCAGTCGGCCGAGGCTATCCGGTGGATGACAAGA
ATCCCGTTGTCGTCTTCGGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Regulatory Protein TetR; Transcriptional Regulator TetR

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MTRPDCRSKLMEVGTQLFAERGLNGVSIRELSHGAGASISMVSYYFGGKEGLYSAVLQEQFACFDQIGEIMEQHAGPVDK
IEAYIRWTIQRHRNNPHLLRFYTSELTNPTSYFPRIVAPAIGKVIRILVKVVEEGIREGVFRQDAHAVNAALALAGMVNY
YFLSTLATEDLISHSPEQDEQLIHQYREIFTRGILAPAS

Sequences:

>Translated_199_residues
MTRPDCRSKLMEVGTQLFAERGLNGVSIRELSHGAGASISMVSYYFGGKEGLYSAVLQEQFACFDQIGEIMEQHAGPVDK
IEAYIRWTIQRHRNNPHLLRFYTSELTNPTSYFPRIVAPAIGKVIRILVKVVEEGIREGVFRQDAHAVNAALALAGMVNY
YFLSTLATEDLISHSPEQDEQLIHQYREIFTRGILAPAS
>Mature_198_residues
TRPDCRSKLMEVGTQLFAERGLNGVSIRELSHGAGASISMVSYYFGGKEGLYSAVLQEQFACFDQIGEIMEQHAGPVDKI
EAYIRWTIQRHRNNPHLLRFYTSELTNPTSYFPRIVAPAIGKVIRILVKVVEEGIREGVFRQDAHAVNAALALAGMVNYY
FLSTLATEDLISHSPEQDEQLIHQYREIFTRGILAPAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22347; Mature: 22216

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPDCRSKLMEVGTQLFAERGLNGVSIRELSHGAGASISMVSYYFGGKEGLYSAVLQEQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
FACFDQIGEIMEQHAGPVDKIEAYIRWTIQRHRNNPHLLRFYTSELTNPTSYFPRIVAPA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCHHHHHHHHHHH
IGKVIRILVKVVEEGIREGVFRQDAHAVNAALALAGMVNYYFLSTLATEDLISHSPEQDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QLIHQYREIFTRGILAPAS
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TRPDCRSKLMEVGTQLFAERGLNGVSIRELSHGAGASISMVSYYFGGKEGLYSAVLQEQ
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
FACFDQIGEIMEQHAGPVDKIEAYIRWTIQRHRNNPHLLRFYTSELTNPTSYFPRIVAPA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCHHHHHHHHHHH
IGKVIRILVKVVEEGIREGVFRQDAHAVNAALALAGMVNYYFLSTLATEDLISHSPEQDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QLIHQYREIFTRGILAPAS
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA