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The map label for this gene is rbfA

Identifier: 78222797

GI number: 78222797

Start: 1789668

End: 1790024

Strand: Direct

Name: rbfA

Synonym: Gmet_1587

Alternate gene names: 78222797

Gene position: 1789668-1790024 (Clockwise)

Preceding gene: 78222796

Following gene: 78222798

Centisome position: 44.77

GC content: 51.54

Gene sequence:

>357_bases
ATGTACAAGCGATCCGATAAAGTTGCTGAAGCTATTCACGAATTGGTGTCCGGGCTCCTTGTCAAGGGGCTCAAAGATCC
ACGCATCGGGTTCGTGACCATAACGGGCGTCAAGGTTTCTGACGATATCCGCCATGCGACTATCTACTATACGGTTATGG
GGAGCGACGAAGCGAAGAAGTCAACCTTGCACGGGCTGAACAGTTCCGTAGGATTCATCCGCAAGGAAGTCAGCAAGGAA
CTGCGGCTTCGGTTCGCGCCGGAACTCATCTTCAAGTATGATGAGTCGATTGAGTACGGAAACCGCATTGACCAGCTTCT
CAAGGAAATCGGCAGCGAGGAAGGTGGCAATGATTGA

Upstream 100 bases:

>100_bases
AGTGCGGTATCGGCCTGGAAAATTATAACGATATCAAGGTGGGAGATATTATAGAAGCCTTTGAAATCGAGAAGATTGCG
ACAAAGCTGTAAGGGATTCC

Downstream 100 bases:

>100_bases
GGGTATCATCGAGGAGATCCGCACTAACGGAAGCTTCCTGATCACTACCCATGAGAATCCCGACGGCGATGCCGTCGGGT
CGTCGCTGGCCCTTGCTGGA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MYKRSDKVAEAIHELVSGLLVKGLKDPRIGFVTITGVKVSDDIRHATIYYTVMGSDEAKKSTLHGLNSSVGFIRKEVSKE
LRLRFAPELIFKYDESIEYGNRIDQLLKEIGSEEGGND

Sequences:

>Translated_118_residues
MYKRSDKVAEAIHELVSGLLVKGLKDPRIGFVTITGVKVSDDIRHATIYYTVMGSDEAKKSTLHGLNSSVGFIRKEVSKE
LRLRFAPELIFKYDESIEYGNRIDQLLKEIGSEEGGND
>Mature_118_residues
MYKRSDKVAEAIHELVSGLLVKGLKDPRIGFVTITGVKVSDDIRHATIYYTVMGSDEAKKSTLHGLNSSVGFIRKEVSKE
LRLRFAPELIFKYDESIEYGNRIDQLLKEIGSEEGGND

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=112, Percent_Identity=33.9285714285714, Blast_Score=75, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_GEOMG (Q39VA5)

Other databases:

- EMBL:   CP000148
- RefSeq:   YP_384544.1
- ProteinModelPortal:   Q39VA5
- SMR:   Q39VA5
- STRING:   Q39VA5
- GeneID:   3740568
- GenomeReviews:   CP000148_GR
- KEGG:   gme:Gmet_1587
- NMPDR:   fig|269799.3.peg.1426
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   Q39VA5
- ProtClustDB:   PRK13815
- BioCyc:   GMET269799:GMET_1587-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13233; Mature: 13233

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKRSDKVAEAIHELVSGLLVKGLKDPRIGFVTITGVKVSDDIRHATIYYTVMGSDEAKK
CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECEEECCCCCEEEEEEEEECCCHHHH
STLHGLNSSVGFIRKEVSKELRLRFAPELIFKYDESIEYGNRIDQLLKEIGSEEGGND
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MYKRSDKVAEAIHELVSGLLVKGLKDPRIGFVTITGVKVSDDIRHATIYYTVMGSDEAKK
CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECEEECCCCCEEEEEEEEECCCHHHH
STLHGLNSSVGFIRKEVSKELRLRFAPELIFKYDESIEYGNRIDQLLKEIGSEEGGND
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA