Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 78222225

GI number: 78222225

Start: 1119656

End: 1121470

Strand: Direct

Name: bphB [H]

Synonym: Gmet_1005

Alternate gene names: 78222225

Gene position: 1119656-1121470 (Clockwise)

Preceding gene: 78222224

Following gene: 78222228

Centisome position: 28.01

GC content: 58.68

Gene sequence:

>1815_bases
ATGGAAGATGCGTCGCGGCAGGGTGAAGAGCACAACCAGCAGGAGCGGGAGATAAAACGCCTCAACCGTCTCTACGCGGC
CCTCAGTCAGGTTAACCATGCCATTGTCCGTATCAGGACACGGGAGGAGCTGTTCCGGGAAGTGACCCGTGTCCTGGTTG
AGGCCGGCAAGTTCTCCATGGTCTGGATCGGCCAGCACAATCCCGCTACCCACGAGATCAAGGTGGCAGCCCAGGAGGGG
GACGAAACCGGTTACCTGAACGGTATCCGCATCTATGCCGACGATCGCCCCGAGGGACGTGGCCCTTGCGGGACAGCCAT
TCGCGAGGGGCACACGTATGTCTGCAATGATTTCCTGAACGATCCGCGCACGTTGCCGTGGCGAGAGTCAGCGGCCCGAG
CGGGATGGCATTCCGTCGCGGGGTTTCCCATCCGCTTGGGTGAGGACGTCTGCTGCGCCCTGATGGTGTATGACCATGAG
GTGAATTTCTTCGGCGAACATGAGGTGGCGCTGCTCGAAGAGGTAGCGCAGACCATATCCTTCGGACTCCTCAGCCTTGA
GCGCGAAACCCTGCGAAACCAGTCGGAAGCGGCCCTCCGCAGGTCAGAGGAAAAATTCAGGAACATCTTCGAGAGTGCGC
CCGTTGGCATCTTCCAGTCCACCATTGGTGGCAGGTTTCTGGGAGTCAACGCAACCCTTGCCGGGATGTTTTGCTACGAT
ACTCCTGAGGAAATAGTCGGCGCCGTGACCGATATTACGTCGCAGCTTTTTGTCGATCCAATGCAACGCACCGAGCTTAT
CCGGTCGGTCCTGGAATCGGCTACGTTTGCCCGGAGTGAGGTCTTGTACCGACGCAAGGATGGAACGGTATTTATCGCCA
CCCTCTCCATGAGAGCAGTGCGTAACGACAACGGTGACGTCGCTTTCCTTGAGGGGTTTGTGGAGGACATAACCGAACGG
AAGCATGCGGAAGAGGAGATACTCAAACTCAACACTGACCTTGAGCAGCGGGTCAGAAACAGGACCGCCGAGCTTGAGGC
GGCGAATTCCGCCTTGAAAAAGGAGATAGAGCACCGGAAGAAGGCGCAGGGAGAGATAACGCGGTTGAACCTGGATCTGT
TGCGGCAGAAGGTGGCGCTGGAAACGGTCAACCGGGAGCTGGAGAGCTTTAGCTATTCGGTCTCCCACGACCTGCGCGCG
CCGCTGCGCCATCTCGATGGGTTCAGCAGGATACTCGAGGAGGAGTGCGCCTCGAAACTGGACGAGTCGGGGATGGATTG
TCTCCAGCGGATTCGGGCCGCCGCCATGAAGATGGACACCCTGGTCAACGCCCTCTTGCAACTGTCGCGAATGACACGCA
CGGAAATAGACCTGCACCCCGTCGATGTTTCGGCCATGGCCAGAGAAATCGTGGGGGAGCTTGCCAAATCCGGCCCGGAC
CGGAACGTGACGGTTGACATCGAAGATGGTGTCGTGGTCATGGCCGATCCCCGTCTCCTGCGGATAGTCATGGATAATCT
TCTCGGTAATGCGTGGAAATACACGTCGAAGAATAATGACGCCTGCATAGAGCTCGGGACCATGGAGGTGACGGGGAAAC
GTGCCTGCTTTGTGCGGGACAACGGGGCCGGCTTTGATATGGCCTATGCGGGGAAGCTGTTCGGGGCATTCCAGCGGCTG
CACAGCGAGGCGGAATTCGAGGGGATCGGGATCGGGTTGGCCACGGTCCAGCGTATCATCCACCGCCACGGCGGGAAGGT
CTGGGCTGAAGGCCAAGTGGGGAAAGGGGCAACGTTTTATTTCATGCTGGAATGA

Upstream 100 bases:

>100_bases
TTGCACGTGCCTTGATTGACATGGCCTGGATGCGCGGTATACGAGAAAGGGGAACTATGCGCCGTCCGCCAACCGGTAGA
AACGGCGCAGGGGAGTGTTG

Downstream 100 bases:

>100_bases
AAAGCCGGATCACATGCCGATGCCGACAATGGTTGTGCCGCAGTCGGGGCACCTCCCGTCCCGGATCTGGTTATTCTCGA
TCAGGTAGCCGTAGCGCTCA

Product: multi-sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MEDASRQGEEHNQQEREIKRLNRLYAALSQVNHAIVRIRTREELFREVTRVLVEAGKFSMVWIGQHNPATHEIKVAAQEG
DETGYLNGIRIYADDRPEGRGPCGTAIREGHTYVCNDFLNDPRTLPWRESAARAGWHSVAGFPIRLGEDVCCALMVYDHE
VNFFGEHEVALLEEVAQTISFGLLSLERETLRNQSEAALRRSEEKFRNIFESAPVGIFQSTIGGRFLGVNATLAGMFCYD
TPEEIVGAVTDITSQLFVDPMQRTELIRSVLESATFARSEVLYRRKDGTVFIATLSMRAVRNDNGDVAFLEGFVEDITER
KHAEEEILKLNTDLEQRVRNRTAELEAANSALKKEIEHRKKAQGEITRLNLDLLRQKVALETVNRELESFSYSVSHDLRA
PLRHLDGFSRILEEECASKLDESGMDCLQRIRAAAMKMDTLVNALLQLSRMTRTEIDLHPVDVSAMAREIVGELAKSGPD
RNVTVDIEDGVVVMADPRLLRIVMDNLLGNAWKYTSKNNDACIELGTMEVTGKRACFVRDNGAGFDMAYAGKLFGAFQRL
HSEAEFEGIGIGLATVQRIIHRHGGKVWAEGQVGKGATFYFMLE

Sequences:

>Translated_604_residues
MEDASRQGEEHNQQEREIKRLNRLYAALSQVNHAIVRIRTREELFREVTRVLVEAGKFSMVWIGQHNPATHEIKVAAQEG
DETGYLNGIRIYADDRPEGRGPCGTAIREGHTYVCNDFLNDPRTLPWRESAARAGWHSVAGFPIRLGEDVCCALMVYDHE
VNFFGEHEVALLEEVAQTISFGLLSLERETLRNQSEAALRRSEEKFRNIFESAPVGIFQSTIGGRFLGVNATLAGMFCYD
TPEEIVGAVTDITSQLFVDPMQRTELIRSVLESATFARSEVLYRRKDGTVFIATLSMRAVRNDNGDVAFLEGFVEDITER
KHAEEEILKLNTDLEQRVRNRTAELEAANSALKKEIEHRKKAQGEITRLNLDLLRQKVALETVNRELESFSYSVSHDLRA
PLRHLDGFSRILEEECASKLDESGMDCLQRIRAAAMKMDTLVNALLQLSRMTRTEIDLHPVDVSAMAREIVGELAKSGPD
RNVTVDIEDGVVVMADPRLLRIVMDNLLGNAWKYTSKNNDACIELGTMEVTGKRACFVRDNGAGFDMAYAGKLFGAFQRL
HSEAEFEGIGIGLATVQRIIHRHGGKVWAEGQVGKGATFYFMLE
>Mature_604_residues
MEDASRQGEEHNQQEREIKRLNRLYAALSQVNHAIVRIRTREELFREVTRVLVEAGKFSMVWIGQHNPATHEIKVAAQEG
DETGYLNGIRIYADDRPEGRGPCGTAIREGHTYVCNDFLNDPRTLPWRESAARAGWHSVAGFPIRLGEDVCCALMVYDHE
VNFFGEHEVALLEEVAQTISFGLLSLERETLRNQSEAALRRSEEKFRNIFESAPVGIFQSTIGGRFLGVNATLAGMFCYD
TPEEIVGAVTDITSQLFVDPMQRTELIRSVLESATFARSEVLYRRKDGTVFIATLSMRAVRNDNGDVAFLEGFVEDITER
KHAEEEILKLNTDLEQRVRNRTAELEAANSALKKEIEHRKKAQGEITRLNLDLLRQKVALETVNRELESFSYSVSHDLRA
PLRHLDGFSRILEEECASKLDESGMDCLQRIRAAAMKMDTLVNALLQLSRMTRTEIDLHPVDVSAMAREIVGELAKSGPD
RNVTVDIEDGVVVMADPRLLRIVMDNLLGNAWKYTSKNNDACIELGTMEVTGKRACFVRDNGAGFDMAYAGKLFGAFQRL
HSEAEFEGIGIGLATVQRIIHRHGGKVWAEGQVGKGATFYFMLE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1789149, Length=269, Percent_Identity=27.8810408921933, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI48994928, Length=239, Percent_Identity=26.3598326359833, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786600, Length=220, Percent_Identity=28.1818181818182, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1786912, Length=216, Percent_Identity=28.7037037037037, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788549, Length=214, Percent_Identity=26.6355140186916, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1790861, Length=237, Percent_Identity=27.8481012658228, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI145693157, Length=232, Percent_Identity=24.5689655172414, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 67898; Mature: 67898

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDASRQGEEHNQQEREIKRLNRLYAALSQVNHAIVRIRTREELFREVTRVLVEAGKFSM
CCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCEEE
VWIGQHNPATHEIKVAAQEGDETGYLNGIRIYADDRPEGRGPCGTAIREGHTYVCNDFLN
EEEECCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEHHHCC
DPRTLPWRESAARAGWHSVAGFPIRLGEDVCCALMVYDHEVNFFGEHEVALLEEVAQTIS
CCCCCCCCHHHHHCCCHHHCCCCEECCCHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
FGLLSLERETLRNQSEAALRRSEEKFRNIFESAPVGIFQSTIGGRFLGVNATLAGMFCYD
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECHHEEEEEECC
TPEEIVGAVTDITSQLFVDPMQRTELIRSVLESATFARSEVLYRRKDGTVFIATLSMRAV
CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEEHHH
RNDNGDVAFLEGFVEDITERKHAEEEILKLNTDLEQRVRNRTAELEAANSALKKEIEHRK
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAQGEITRLNLDLLRQKVALETVNRELESFSYSVSHDLRAPLRHLDGFSRILEEECASKL
HHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DESGMDCLQRIRAAAMKMDTLVNALLQLSRMTRTEIDLHPVDVSAMAREIVGELAKSGPD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
RNVTVDIEDGVVVMADPRLLRIVMDNLLGNAWKYTSKNNDACIELGTMEVTGKRACFVRD
CCEEEEECCCEEEEECCHHHHHHHHHHHCCCEEECCCCCCCEEEEEEEEECCCEEEEEEC
NGAGFDMAYAGKLFGAFQRLHSEAEFEGIGIGLATVQRIIHRHGGKVWAEGQVGKGATFY
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCEEEE
FMLE
EEEC
>Mature Secondary Structure
MEDASRQGEEHNQQEREIKRLNRLYAALSQVNHAIVRIRTREELFREVTRVLVEAGKFSM
CCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCEEE
VWIGQHNPATHEIKVAAQEGDETGYLNGIRIYADDRPEGRGPCGTAIREGHTYVCNDFLN
EEEECCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEHHHCC
DPRTLPWRESAARAGWHSVAGFPIRLGEDVCCALMVYDHEVNFFGEHEVALLEEVAQTIS
CCCCCCCCHHHHHCCCHHHCCCCEECCCHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
FGLLSLERETLRNQSEAALRRSEEKFRNIFESAPVGIFQSTIGGRFLGVNATLAGMFCYD
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECHHEEEEEECC
TPEEIVGAVTDITSQLFVDPMQRTELIRSVLESATFARSEVLYRRKDGTVFIATLSMRAV
CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEEHHH
RNDNGDVAFLEGFVEDITERKHAEEEILKLNTDLEQRVRNRTAELEAANSALKKEIEHRK
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAQGEITRLNLDLLRQKVALETVNRELESFSYSVSHDLRAPLRHLDGFSRILEEECASKL
HHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DESGMDCLQRIRAAAMKMDTLVNALLQLSRMTRTEIDLHPVDVSAMAREIVGELAKSGPD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
RNVTVDIEDGVVVMADPRLLRIVMDNLLGNAWKYTSKNNDACIELGTMEVTGKRACFVRD
CCEEEEECCCEEEEECCHHHHHHHHHHHCCCEEECCCCCCCEEEEEEEEECCCEEEEEEC
NGAGFDMAYAGKLFGAFQRLHSEAEFEGIGIGLATVQRIIHRHGGKVWAEGQVGKGATFY
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCEEEE
FMLE
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]