| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is secA
Identifier: 78222171
GI number: 78222171
Start: 1055207
End: 1057906
Strand: Direct
Name: secA
Synonym: Gmet_0951
Alternate gene names: 78222171
Gene position: 1055207-1057906 (Clockwise)
Preceding gene: 78222170
Following gene: 78222172
Centisome position: 26.4
GC content: 61.15
Gene sequence:
>2700_bases ATGTTCGGATCCATCATCAAGAAGATCGTGGGAAGCAAGAACGAGCGGGAACTGAAGCGCCTCTGGCCCATCGTGGAAAA GATCAACGGGCTGGAGCCCCAGATGGCAGCGCTCACCGACGACCAGCTCAGGAATAAAACCTCCGAGTTCAAGGAGCGTT GCGCCAAGGGGGAATCCCTCGACTCCCTCCTCCCCGAGGCCTTTGCCGTCTGCCGCGAGGCGGGCAAGAGAGTCCACAAC ATGCGCCACTTCGACGTGCAGCTCATCGGCGGCATGGTGCTCCACAGCGGCAAGATCGCCGAGATGAAGACCGGCGAGGG TAAGACGCTTGTGGCTACCCTCCCTGCCTACCTGAACGCCCTTACCGGCAAAGGGGTACATGTGGTCACGGTCAACGACT ACCTGGCCAAGCGCGACTCCGACTGGATGGGACGGATCTACAACTTCCTCGGCCTCTCCGTCGGCGTCATCGTCCATGGC CTCGACGACGAGGAGCGCCGCGAGGCCTACGCCGCCGACATCACCTACGGCACCAACAACGAGTTCGGCTTCGACTATCT GCGGGACAATATGAAGTTCTCCCTGGACGACTACGTGCAGCGTCCCTTCTATTTCTCCATCGTGGACGAGGTTGACTCGA TCCTCATCGACGAGGCCCGGACGCCGCTCATCATCTCCGGCCCCACCGAGGACTCCACTGACAAGTACTACATCATCGAC CGGGTCATCCCCCACCTGAAAAAGGGGGAGATGAAGGAGGTGGAGGCCAACACCCTCTCGGGCAAGAAAAAGGAATACAC CGGCGACTTCACCGTGGATGAGAAGGCCCGCTCCGCCACCCTCACCGAGGAGGGTGTGCTGAAGGTGGAGAAGCTCTTGA AGATTGACAACCTCTACGACCCGCGCCACATGGAGTTCCTCCACCACGTGAACCAGGCCCTGCGGGCCCATGCCCTGTTC CGGCGCGACGTGGACTATGTGGTGAAGGAAGGGGAGGTCATCATCGTCGATGAGTTCACCGGCCGCCTCATGCCGGGACG CCGTTGGTCCGACGGCCTCCACCAGGCCATCGAGGCCAAGGAGGGGGTGGAGATCGAGAACGAGAACCAGACCCTGGCCA CCATCACCTTCCAGAACTACTTCCGGATGTACGAGAAACTCTCGGGCATGACCGGTACCGCCGACACCGAGGCCGAGGAA TTCCACAAGATCTACAAGCTGGACGTGACGGTTATCCCCACCAACCGGCCCCTGCTCCGCCCCGACTTCCCCGACGTCAT CTACAAGACCGAGCGGGAGAAGTTCGCCGCCGTAATCGAAGAGATCAAGGATTGCCACCAGAAGGGGCAGCCGGTCCTCG TCGGTACCATCTCCATCGAGAAGTCCGAGATCCTTTCGGAACTCCTCAAAAAACAGGGGATTCCCCACAACGTCCTCAAT GCCAAGCAGCACGAGCGGGAGGCCGAGATCGTGGCCCAGGCGGGGCGCAAGGGGATGCTGACCATCGCCACCAACATGGC CGGCCGCGGTACCGACATTGTGTTGGGGGGGAATCCCGATTCCCTGGCCAAGCAGTGGCGCCGGGAGAACCCCGATGCCG CGGATGAGGAGTACGCCGCTATCCTTGCCAAGTACAAGGCGGAGTGCGCGGCCGAGCACGACGAGGTAGTGAAGCTGGGC GGCCTTCACATCCTCGGCACCGAGCGCCACGAATCCCGGCGCATCGACAACCAGCTCCGGGGCCGTTCCGGCCGCCAGGG TGACCCGGGATCATCGCGCTTCTACCTGTCGCTGGAGGATGATCTCCTGCGCATCTTCGGCTCCGAGCGGGTCTCCAAGA TCATGGACTTCCTCAAGATCGAGGAGGGGGAGGCCATCACCCACGGCATGATCACCAAGGCCATCGAGAACGCCCAGAAG AAGGTGGAGGCCCACAACTTCGAGATCCGCAAGCACCTCATTGAGTACGACGACGTCATGAACAAGCAGCGCGAGGTCAT CTACACCCAGCGCCGGGAAATCCTGGCCGGGGAGGACATCCGCGGCAACTTCACCCAGATGCTCGACGACACCATCGAGG ACATCGCCGCGGCCTTCGCCATCGACAAGGTCCACGCCTCCGAATGGGACTGGCAGGCCATTGTCGAGGCGGTCTACAAG ACCTTCGGCTTCCAGATCGACATCCCGGCCGAAACCATGGACCGGCTCGCCCCCGAGAGCTTCCGCAAGCTCCTCAAGGA ATCGGTTCATGAGGCCTATGAAGGGAAGCTGGCTTCCTTCGGCGACGAGCTCATGGATCACCTCATCAAGGTGATCATGC TCCAGGCTATCGACAGCCAGTGGAAGGACCATCTCCTCTCCATCGACCACCTGAAGGAGGGGATCGGCCTCAGGGGGTAC GGCCAGAAGGACCCGAAGCAGGAGTACAAGAAGGAGGCCTACCGCCTCTTCATGGATATGATGGCCCGCATCGCCGAAGA AACCGTGGAGAAGATCTTCTGGGTCCAGATCGCCCGCGAGGAAGACGTGGAACGGATGGAAGAGGAACAGCAGCAACAGG CCCAGAAGAAGATAGTATTCAATCTCGGCGAGGAGCCGGCAACAGCTCCCCAGCCGGCCAGGAGCAAGAAGAGCGCTTCC CGCAACGATCCGTGCCCCTGCGGGAGCGGGAAGAAGTATAAGAAGTGCTGTGGGAAATGA
Upstream 100 bases:
>100_bases GCCAGACTCGACACGGATTCTGTTGAGCATTTCACCCCTTTGTGCTACCGTTCTCCGTTGCATTTCCCTAAAAAATATTC CTTCCAGGAGACACCTCATA
Downstream 100 bases:
>100_bases TCGGGATTTCATGTGGGGGCGCAATTCGTTGCGCCCGGATTGCTTGCCGTGAGGATAGGGCGTGATTAATCACCCCCCTA CGCGAAAACAAGCGGAGGGC
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 899; Mature: 899
Protein sequence:
>899_residues MFGSIIKKIVGSKNERELKRLWPIVEKINGLEPQMAALTDDQLRNKTSEFKERCAKGESLDSLLPEAFAVCREAGKRVHN MRHFDVQLIGGMVLHSGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDSDWMGRIYNFLGLSVGVIVHG LDDEERREAYAADITYGTNNEFGFDYLRDNMKFSLDDYVQRPFYFSIVDEVDSILIDEARTPLIISGPTEDSTDKYYIID RVIPHLKKGEMKEVEANTLSGKKKEYTGDFTVDEKARSATLTEEGVLKVEKLLKIDNLYDPRHMEFLHHVNQALRAHALF RRDVDYVVKEGEVIIVDEFTGRLMPGRRWSDGLHQAIEAKEGVEIENENQTLATITFQNYFRMYEKLSGMTGTADTEAEE FHKIYKLDVTVIPTNRPLLRPDFPDVIYKTEREKFAAVIEEIKDCHQKGQPVLVGTISIEKSEILSELLKKQGIPHNVLN AKQHEREAEIVAQAGRKGMLTIATNMAGRGTDIVLGGNPDSLAKQWRRENPDAADEEYAAILAKYKAECAAEHDEVVKLG GLHILGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLLRIFGSERVSKIMDFLKIEEGEAITHGMITKAIENAQK KVEAHNFEIRKHLIEYDDVMNKQREVIYTQRREILAGEDIRGNFTQMLDDTIEDIAAAFAIDKVHASEWDWQAIVEAVYK TFGFQIDIPAETMDRLAPESFRKLLKESVHEAYEGKLASFGDELMDHLIKVIMLQAIDSQWKDHLLSIDHLKEGIGLRGY GQKDPKQEYKKEAYRLFMDMMARIAEETVEKIFWVQIAREEDVERMEEEQQQQAQKKIVFNLGEEPATAPQPARSKKSAS RNDPCPCGSGKKYKKCCGK
Sequences:
>Translated_899_residues MFGSIIKKIVGSKNERELKRLWPIVEKINGLEPQMAALTDDQLRNKTSEFKERCAKGESLDSLLPEAFAVCREAGKRVHN MRHFDVQLIGGMVLHSGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDSDWMGRIYNFLGLSVGVIVHG LDDEERREAYAADITYGTNNEFGFDYLRDNMKFSLDDYVQRPFYFSIVDEVDSILIDEARTPLIISGPTEDSTDKYYIID RVIPHLKKGEMKEVEANTLSGKKKEYTGDFTVDEKARSATLTEEGVLKVEKLLKIDNLYDPRHMEFLHHVNQALRAHALF RRDVDYVVKEGEVIIVDEFTGRLMPGRRWSDGLHQAIEAKEGVEIENENQTLATITFQNYFRMYEKLSGMTGTADTEAEE FHKIYKLDVTVIPTNRPLLRPDFPDVIYKTEREKFAAVIEEIKDCHQKGQPVLVGTISIEKSEILSELLKKQGIPHNVLN AKQHEREAEIVAQAGRKGMLTIATNMAGRGTDIVLGGNPDSLAKQWRRENPDAADEEYAAILAKYKAECAAEHDEVVKLG GLHILGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLLRIFGSERVSKIMDFLKIEEGEAITHGMITKAIENAQK KVEAHNFEIRKHLIEYDDVMNKQREVIYTQRREILAGEDIRGNFTQMLDDTIEDIAAAFAIDKVHASEWDWQAIVEAVYK TFGFQIDIPAETMDRLAPESFRKLLKESVHEAYEGKLASFGDELMDHLIKVIMLQAIDSQWKDHLLSIDHLKEGIGLRGY GQKDPKQEYKKEAYRLFMDMMARIAEETVEKIFWVQIAREEDVERMEEEQQQQAQKKIVFNLGEEPATAPQPARSKKSAS RNDPCPCGSGKKYKKCCGK >Mature_899_residues MFGSIIKKIVGSKNERELKRLWPIVEKINGLEPQMAALTDDQLRNKTSEFKERCAKGESLDSLLPEAFAVCREAGKRVHN MRHFDVQLIGGMVLHSGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDSDWMGRIYNFLGLSVGVIVHG LDDEERREAYAADITYGTNNEFGFDYLRDNMKFSLDDYVQRPFYFSIVDEVDSILIDEARTPLIISGPTEDSTDKYYIID RVIPHLKKGEMKEVEANTLSGKKKEYTGDFTVDEKARSATLTEEGVLKVEKLLKIDNLYDPRHMEFLHHVNQALRAHALF RRDVDYVVKEGEVIIVDEFTGRLMPGRRWSDGLHQAIEAKEGVEIENENQTLATITFQNYFRMYEKLSGMTGTADTEAEE FHKIYKLDVTVIPTNRPLLRPDFPDVIYKTEREKFAAVIEEIKDCHQKGQPVLVGTISIEKSEILSELLKKQGIPHNVLN AKQHEREAEIVAQAGRKGMLTIATNMAGRGTDIVLGGNPDSLAKQWRRENPDAADEEYAAILAKYKAECAAEHDEVVKLG GLHILGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLLRIFGSERVSKIMDFLKIEEGEAITHGMITKAIENAQK KVEAHNFEIRKHLIEYDDVMNKQREVIYTQRREILAGEDIRGNFTQMLDDTIEDIAAAFAIDKVHASEWDWQAIVEAVYK TFGFQIDIPAETMDRLAPESFRKLLKESVHEAYEGKLASFGDELMDHLIKVIMLQAIDSQWKDHLLSIDHLKEGIGLRGY GQKDPKQEYKKEAYRLFMDMMARIAEETVEKIFWVQIAREEDVERMEEEQQQQAQKKIVFNLGEEPATAPQPARSKKSAS RNDPCPCGSGKKYKKCCGK
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular mo
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity)
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family
Homologues:
Organism=Escherichia coli, GI1786287, Length=922, Percent_Identity=55.0976138828633, Blast_Score=989, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SECA_GEOMG (Q39X31)
Other databases:
- EMBL: CP000148 - RefSeq: YP_383918.1 - HSSP: P10408 - ProteinModelPortal: Q39X31 - SMR: Q39X31 - STRING: Q39X31 - GeneID: 3738521 - GenomeReviews: CP000148_GR - KEGG: gme:Gmet_0951 - NMPDR: fig|269799.3.peg.1026 - eggNOG: COG0653 - HOGENOM: HBG284200 - OMA: GGMVLHD - PhylomeDB: Q39X31 - ProtClustDB: PRK12904 - BioCyc: GMET269799:GMET_0951-MONOMER - GO: GO:0005737 - HAMAP: MF_01382 - InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 - Gene3D: G3DSA:1.10.3060.10 - PRINTS: PR00906 - SMART: SM00957 - SMART: SM00958 - TIGRFAMs: TIGR00963
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW; SSF81767 SecA_PP_bd; SSF81886 SecA_SW
EC number: NA
Molecular weight: Translated: 102345; Mature: 102345
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: PS01312 SECA; PS51196 SECA_MOTOR_DEAD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGSIIKKIVGSKNERELKRLWPIVEKINGLEPQMAALTDDQLRNKTSEFKERCAKGESL CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCH DSLLPEAFAVCREAGKRVHNMRHFDVQLIGGMVLHSGKIAEMKTGEGKTLVATLPAYLNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEHHHHHHH LTGKGVHVVTVNDYLAKRDSDWMGRIYNFLGLSVGVIVHGLDDEERREAYAADITYGTNN HCCCCEEEEEECHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHEEEECCCC EFGFDYLRDNMKFSLDDYVQRPFYFSIVDEVDSILIDEARTPLIISGPTEDSTDKYYIID CCCHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEHH RVIPHLKKGEMKEVEANTLSGKKKEYTGDFTVDEKARSATLTEEGVLKVEKLLKIDNLYD HHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCC PRHMEFLHHVNQALRAHALFRRDVDYVVKEGEVIIVDEFTGRLMPGRRWSDGLHQAIEAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH EGVEIENENQTLATITFQNYFRMYEKLSGMTGTADTEAEEFHKIYKLDVTVIPTNRPLLR CCCCEECCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCCC PDFPDVIYKTEREKFAAVIEEIKDCHQKGQPVLVGTISIEKSEILSELLKKQGIPHNVLN CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCCHHHC AKQHEREAEIVAQAGRKGMLTIATNMAGRGTDIVLGGNPDSLAKQWRRENPDAADEEYAA CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHHHHCCCCCCHHHHHH ILAKYKAECAAEHDEVVKLGGLHILGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED HHHHHHHHHHCCHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHH DLLRIFGSERVSKIMDFLKIEEGEAITHGMITKAIENAQKKVEAHNFEIRKHLIEYDDVM HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NKQREVIYTQRREILAGEDIRGNFTQMLDDTIEDIAAAFAIDKVHASEWDWQAIVEAVYK HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH TFGFQIDIPAETMDRLAPESFRKLLKESVHEAYEGKLASFGDELMDHLIKVIMLQAIDSQ HHCCEEECCHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH WKDHLLSIDHLKEGIGLRGYGQKDPKQEYKKEAYRLFMDMMARIAEETVEKIFWVQIARE HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDVERMEEEQQQQAQKKIVFNLGEEPATAPQPARSKKSASRNDPCPCGSGKKYKKCCGK HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHCCC >Mature Secondary Structure MFGSIIKKIVGSKNERELKRLWPIVEKINGLEPQMAALTDDQLRNKTSEFKERCAKGESL CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCH DSLLPEAFAVCREAGKRVHNMRHFDVQLIGGMVLHSGKIAEMKTGEGKTLVATLPAYLNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEHHHHHHH LTGKGVHVVTVNDYLAKRDSDWMGRIYNFLGLSVGVIVHGLDDEERREAYAADITYGTNN HCCCCEEEEEECHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHEEEECCCC EFGFDYLRDNMKFSLDDYVQRPFYFSIVDEVDSILIDEARTPLIISGPTEDSTDKYYIID CCCHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEHH RVIPHLKKGEMKEVEANTLSGKKKEYTGDFTVDEKARSATLTEEGVLKVEKLLKIDNLYD HHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCC PRHMEFLHHVNQALRAHALFRRDVDYVVKEGEVIIVDEFTGRLMPGRRWSDGLHQAIEAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH EGVEIENENQTLATITFQNYFRMYEKLSGMTGTADTEAEEFHKIYKLDVTVIPTNRPLLR CCCCEECCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCCC PDFPDVIYKTEREKFAAVIEEIKDCHQKGQPVLVGTISIEKSEILSELLKKQGIPHNVLN CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCCHHHC AKQHEREAEIVAQAGRKGMLTIATNMAGRGTDIVLGGNPDSLAKQWRRENPDAADEEYAA CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHHHHCCCCCCHHHHHH ILAKYKAECAAEHDEVVKLGGLHILGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED HHHHHHHHHHCCHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHH DLLRIFGSERVSKIMDFLKIEEGEAITHGMITKAIENAQKKVEAHNFEIRKHLIEYDDVM HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NKQREVIYTQRREILAGEDIRGNFTQMLDDTIEDIAAAFAIDKVHASEWDWQAIVEAVYK HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH TFGFQIDIPAETMDRLAPESFRKLLKESVHEAYEGKLASFGDELMDHLIKVIMLQAIDSQ HHCCEEECCHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH WKDHLLSIDHLKEGIGLRGYGQKDPKQEYKKEAYRLFMDMMARIAEETVEKIFWVQIARE HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDVERMEEEQQQQAQKKIVFNLGEEPATAPQPARSKKSASRNDPCPCGSGKKYKKCCGK HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA