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The map label for this gene is yhdJ [C]

Identifier: 78221896

GI number: 78221896

Start: 742510

End: 744072

Strand: Reverse

Name: yhdJ [C]

Synonym: Gmet_0676

Alternate gene names: 78221896

Gene position: 744072-742510 (Counterclockwise)

Preceding gene: 78221897

Following gene: 78221895

Centisome position: 18.61

GC content: 56.69

Gene sequence:

>1563_bases
ATGCCCTTTCTTGACTGGGTCAACAAGACCCAGGCGGTGAGCAGCACCGCCGACGTTCCCTATCACCTGCTGCAATTCCG
GACGGCCCACGGAGACGCGGGGGCCGACAACCTTCTCATTCAGGGAGACAACCTCAAGGCCCTCAAGGCCCTGCTCCCCT
TTTACCGGGGACGGGTGAAGTGCATCTATATCGACCCCCCCTACAACACCCAGTCGGCCTTTGCCCACTACGACGACAAG
CTGGAGCATTCCCAGTGGCTGTCGATGATGTATCCCCGGTTGGTGCTGCTGCGGGAACTGCTGAAGGAAGATGGTAGTTT
ATGGATTTCGTGTGATGACAACGAAGCACATTACATCAAGGTCATTGTCGATGAGATTTTTGGAAGACTAAATTTTATAA
TTGACGTCTCGTGGCAAAAACGAGATGGCCCACCAAACGATCGAAAAATCGGAGCAATCCATGAGCATATTCTTGTTTGG
GGCAAGGGGAAAAGCGGTAACAGCAAAAAGACGTTAGCTGAAGAGGCGTTCAACCTTATGCCACGTACGGAAAAAGCAAA
CTCGCAATATGATGTATTCAAAGAACCCGATGGACCGGATGAGCGAGGACCTTTCCGCAAGATAGACACAACAGCTAACG
GCAAGGGTGGACGGTTTGTAACTAGCCTATTTTACCCTATTAAAAACCCTTACACCGCTGAAGAAGTTTGGCCTCGTCAA
GGTACATGCTGGCGGCATAGCAAAGAAGAGATGGAACGCCTTCAAGCTGAAAAACGCCTATATTGGGGAGTAAACGGGAC
CGCCAAGACTCCTATGCGCAAGCTCTTTTTGGATGAAGCAAAGCAGGGGATGACTACCCCCTCTATATGGAGCGATACAG
GGTTAAATCAGCATGCTAGCTCTGAAATAGAGAAACTATTTGGTGAAAAGGCAGCTTTTGAAACACCAAAGCCTGAAGCA
TTGCTTCAACGCATCATACACATCGCCACTAACCCCGGCGACCTCGTCCTCGACTCCTTCCTCGGCTCCGGCACCACCGC
CGCCGTGGCCCACAAGATGGGCCGCCGCTGGATCGGTATCGAAATGGGGGAGCACGCCGTGACCCACTGCCTGCCGCGCC
TGGAAAAGGTCATCGGCGGAGAGCCAGGGGGAATTTCCAAGGCGGTGGACTGGCAGGGGGGGGGCGGCTTCCGCTTCCAC
TCCCTCGGGGAGCCGGTGTTCGACGCCGACGGCGGCATCCACCCAGCGGTCCGTTTCCCGGCCCTGGCCGCCTATCTCTG
GCATTTCGAGACGGGGGAACCGGCGCGGCAGACCTTCACCACCCCGCTGCTCGGCACCCATGGGGGCACGGCTTGGTATC
TCCTCTACAACGGTATCCTCGGCGACCGGCGGCCCCAGGGGGGCAACGTGCTCACCTCGGCCGTGCTGGCCCATCTGGAC
GAGGCCTATCCCCACCACGGCCCCCGGGTGATCTACGGTGAAACCACCCGGCTGGGGGAAGCCCGGCTGCGCGAGGCAGG
CATCACGTTCAAACAAATCCCTTACGATATCAAGGCGCGCTAA

Upstream 100 bases:

>100_bases
CGTAACCTTGAGGATATTCTGCTGGAGAGATTGACGCGGTAACGTTCCGCCTCGGCCACCGACGCCGTTTTTTGTACACA
AATCAACAAGGATACCACCC

Downstream 100 bases:

>100_bases
CCATGTTCAAACTTAAGGATTATCAGGAAAATGCCCTTACGGCCCTTGACGGGTTTTTCCGTCAACTGCGCATGTCGGGC
CTGGCCGAGGCGTGGCGGCA

Product: DNA methylase N-4/N-6

Products: NA

Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MPFLDWVNKTQAVSSTADVPYHLLQFRTAHGDAGADNLLIQGDNLKALKALLPFYRGRVKCIYIDPPYNTQSAFAHYDDK
LEHSQWLSMMYPRLVLLRELLKEDGSLWISCDDNEAHYIKVIVDEIFGRLNFIIDVSWQKRDGPPNDRKIGAIHEHILVW
GKGKSGNSKKTLAEEAFNLMPRTEKANSQYDVFKEPDGPDERGPFRKIDTTANGKGGRFVTSLFYPIKNPYTAEEVWPRQ
GTCWRHSKEEMERLQAEKRLYWGVNGTAKTPMRKLFLDEAKQGMTTPSIWSDTGLNQHASSEIEKLFGEKAAFETPKPEA
LLQRIIHIATNPGDLVLDSFLGSGTTAAVAHKMGRRWIGIEMGEHAVTHCLPRLEKVIGGEPGGISKAVDWQGGGGFRFH
SLGEPVFDADGGIHPAVRFPALAAYLWHFETGEPARQTFTTPLLGTHGGTAWYLLYNGILGDRRPQGGNVLTSAVLAHLD
EAYPHHGPRVIYGETTRLGEARLREAGITFKQIPYDIKAR

Sequences:

>Translated_520_residues
MPFLDWVNKTQAVSSTADVPYHLLQFRTAHGDAGADNLLIQGDNLKALKALLPFYRGRVKCIYIDPPYNTQSAFAHYDDK
LEHSQWLSMMYPRLVLLRELLKEDGSLWISCDDNEAHYIKVIVDEIFGRLNFIIDVSWQKRDGPPNDRKIGAIHEHILVW
GKGKSGNSKKTLAEEAFNLMPRTEKANSQYDVFKEPDGPDERGPFRKIDTTANGKGGRFVTSLFYPIKNPYTAEEVWPRQ
GTCWRHSKEEMERLQAEKRLYWGVNGTAKTPMRKLFLDEAKQGMTTPSIWSDTGLNQHASSEIEKLFGEKAAFETPKPEA
LLQRIIHIATNPGDLVLDSFLGSGTTAAVAHKMGRRWIGIEMGEHAVTHCLPRLEKVIGGEPGGISKAVDWQGGGGFRFH
SLGEPVFDADGGIHPAVRFPALAAYLWHFETGEPARQTFTTPLLGTHGGTAWYLLYNGILGDRRPQGGNVLTSAVLAHLD
EAYPHHGPRVIYGETTRLGEARLREAGITFKQIPYDIKAR
>Mature_519_residues
PFLDWVNKTQAVSSTADVPYHLLQFRTAHGDAGADNLLIQGDNLKALKALLPFYRGRVKCIYIDPPYNTQSAFAHYDDKL
EHSQWLSMMYPRLVLLRELLKEDGSLWISCDDNEAHYIKVIVDEIFGRLNFIIDVSWQKRDGPPNDRKIGAIHEHILVWG
KGKSGNSKKTLAEEAFNLMPRTEKANSQYDVFKEPDGPDERGPFRKIDTTANGKGGRFVTSLFYPIKNPYTAEEVWPRQG
TCWRHSKEEMERLQAEKRLYWGVNGTAKTPMRKLFLDEAKQGMTTPSIWSDTGLNQHASSEIEKLFGEKAAFETPKPEAL
LQRIIHIATNPGDLVLDSFLGSGTTAAVAHKMGRRWIGIEMGEHAVTHCLPRLEKVIGGEPGGISKAVDWQGGGGFRFHS
LGEPVFDADGGIHPAVRFPALAAYLWHFETGEPARQTFTTPLLGTHGGTAWYLLYNGILGDRRPQGGNVLTSAVLAHLDE
AYPHHGPRVIYGETTRLGEARLREAGITFKQIPYDIKAR

Specific function: Unknown

COG id: COG2189

COG function: function code L; Adenine specific DNA methylase Mod

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI87082238, Length=73, Percent_Identity=49.3150684931507, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: =2.1.1.72 [H]

Molecular weight: Translated: 58269; Mature: 58138

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFLDWVNKTQAVSSTADVPYHLLQFRTAHGDAGADNLLIQGDNLKALKALLPFYRGRVK
CCCHHHHCHHHHHCCCCCCCHHHHHEECCCCCCCCCCEEEECCCHHHHHHHHHHHCCCEE
CIYIDPPYNTQSAFAHYDDKLEHSQWLSMMYPRLVLLRELLKEDGSLWISCDDNEAHYIK
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEH
VIVDEIFGRLNFIIDVSWQKRDGPPNDRKIGAIHEHILVWGKGKSGNSKKTLAEEAFNLM
HHHHHHHHHEEEEEEEEEECCCCCCCCCEEHEEEEEEEEEECCCCCCCHHHHHHHHHHHC
PRTEKANSQYDVFKEPDGPDERGPFRKIDTTANGKGGRFVTSLFYPIKNPYTAEEVWPRQ
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEHHHHCCCCCCHHHCCCCC
GTCWRHSKEEMERLQAEKRLYWGVNGTAKTPMRKLFLDEAKQGMTTPSIWSDTGLNQHAS
CCCCCCCHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
SEIEKLFGEKAAFETPKPEALLQRIIHIATNPGDLVLDSFLGSGTTAAVAHKMGRRWIGI
HHHHHHHCCHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCEEEEE
EMGEHAVTHCLPRLEKVIGGEPGGISKAVDWQGGGGFRFHSLGEPVFDADGGIHPAVRFP
ECCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHH
ALAAYLWHFETGEPARQTFTTPLLGTHGGTAWYLLYNGILGDRRPQGGNVLTSAVLAHLD
HHHHHHHHCCCCCHHHHHHCCCCEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
EAYPHHGPRVIYGETTRLGEARLREAGITFKQIPYDIKAR
HHCCCCCCEEEEECCCCHHHHHHHHHCCCHHHCCCCCCCC
>Mature Secondary Structure 
PFLDWVNKTQAVSSTADVPYHLLQFRTAHGDAGADNLLIQGDNLKALKALLPFYRGRVK
CCHHHHCHHHHHCCCCCCCHHHHHEECCCCCCCCCCEEEECCCHHHHHHHHHHHCCCEE
CIYIDPPYNTQSAFAHYDDKLEHSQWLSMMYPRLVLLRELLKEDGSLWISCDDNEAHYIK
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEH
VIVDEIFGRLNFIIDVSWQKRDGPPNDRKIGAIHEHILVWGKGKSGNSKKTLAEEAFNLM
HHHHHHHHHEEEEEEEEEECCCCCCCCCEEHEEEEEEEEEECCCCCCCHHHHHHHHHHHC
PRTEKANSQYDVFKEPDGPDERGPFRKIDTTANGKGGRFVTSLFYPIKNPYTAEEVWPRQ
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEHHHHCCCCCCHHHCCCCC
GTCWRHSKEEMERLQAEKRLYWGVNGTAKTPMRKLFLDEAKQGMTTPSIWSDTGLNQHAS
CCCCCCCHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
SEIEKLFGEKAAFETPKPEALLQRIIHIATNPGDLVLDSFLGSGTTAAVAHKMGRRWIGI
HHHHHHHCCHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCEEEEE
EMGEHAVTHCLPRLEKVIGGEPGGISKAVDWQGGGGFRFHSLGEPVFDADGGIHPAVRFP
ECCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHH
ALAAYLWHFETGEPARQTFTTPLLGTHGGTAWYLLYNGILGDRRPQGGNVLTSAVLAHLD
HHHHHHHHCCCCCHHHHHHCCCCEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
EAYPHHGPRVIYGETTRLGEARLREAGITFKQIPYDIKAR
HHCCCCCCEEEEECCCCHHHHHHHHHCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]