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The map label for this gene is pdtaR [H]

Identifier: 78221880

GI number: 78221880

Start: 720438

End: 721046

Strand: Direct

Name: pdtaR [H]

Synonym: Gmet_0660

Alternate gene names: 78221880

Gene position: 720438-721046 (Clockwise)

Preceding gene: 78221874

Following gene: 78221882

Centisome position: 18.02

GC content: 57.47

Gene sequence:

>609_bases
ATGGAGGAGATTGCAGGTAAAAACATCAATAAGGCGGTGATTTCATTGAGAAGTGTTCTCGTGTGCGATGATGAGCCGAT
TATCAGGATGAGCCTAAAAAATAAGCTCAAGGAGTTGGGCTTCGATGAAATCCGGGAGTGCGGGGACGGGGAGCAGGCTG
TTGCGACGGCGCTGGCCACCATGCCCGACATCATTATCCTCGATGTCTCGATGCCCAAGAAGGACGGGATCACGGCGGCC
CGGGAAATCCGGCAGCGGCTGAAGATCCCGATTATCCTCCTGACGGCCTGTTGTGACCCTGATACGGTCAGGCGGGCCAA
GGAGAGCGGCATTGGCGGCTTTCTGGCCAAGCCGTTACGGGAGCAGGACCTCTGGCCCGCCATTGAACTTGCCTGTGCCC
ATGCCGACGAGGTGGAAACTCTCAAGGAAGAGGTGGAGGACCTGAAGGAAATCCTGGAGAGCCGCAAGGTTATCGAGAAG
GCCAAGGGGGTCCTGATGCGGAACCAGGGGCTTTCGGAGCCCGAGGCGTTCCGCAGGATGCAGAAGCTGGCCATGGATAA
GCGCAAGAGCATGCGGCAGATCGCCGAGGCGATTTTGCTTACGGAATAA

Upstream 100 bases:

>100_bases
CGTCAGCATCTATTGTGGCACCGTGGTGGGCATTGTAAAGGATGGCGGAGGGGAACGCCAGCCCCTCCCTTGGAACGGTT
TATGCTGAAAGCCAAGGAGT

Downstream 100 bases:

>100_bases
AAAGGGGCGCCTCCCGCGAGGGGGCGCCCCTTTCGTACGACTATTGTGTGGCGGAACTGAAGGGTAACGGTTCCCCTCAG
CGGATGCCTGCGTGGTACTC

Product: response regulator receiver/ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MEEIAGKNINKAVISLRSVLVCDDEPIIRMSLKNKLKELGFDEIRECGDGEQAVATALATMPDIIILDVSMPKKDGITAA
REIRQRLKIPIILLTACCDPDTVRRAKESGIGGFLAKPLREQDLWPAIELACAHADEVETLKEEVEDLKEILESRKVIEK
AKGVLMRNQGLSEPEAFRRMQKLAMDKRKSMRQIAEAILLTE

Sequences:

>Translated_202_residues
MEEIAGKNINKAVISLRSVLVCDDEPIIRMSLKNKLKELGFDEIRECGDGEQAVATALATMPDIIILDVSMPKKDGITAA
REIRQRLKIPIILLTACCDPDTVRRAKESGIGGFLAKPLREQDLWPAIELACAHADEVETLKEEVEDLKEILESRKVIEK
AKGVLMRNQGLSEPEAFRRMQKLAMDKRKSMRQIAEAILLTE
>Mature_202_residues
MEEIAGKNINKAVISLRSVLVCDDEPIIRMSLKNKLKELGFDEIRECGDGEQAVATALATMPDIIILDVSMPKKDGITAA
REIRQRLKIPIILLTACCDPDTVRRAKESGIGGFLAKPLREQDLWPAIELACAHADEVETLKEEVEDLKEILESRKVIEK
AKGVLMRNQGLSEPEAFRRMQKLAMDKRKSMRQIAEAILLTE

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=141, Percent_Identity=27.6595744680851, Blast_Score=64, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6322044, Length=122, Percent_Identity=31.9672131147541, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22607; Mature: 22607

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEIAGKNINKAVISLRSVLVCDDEPIIRMSLKNKLKELGFDEIRECGDGEQAVATALAT
CCCCCCCCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHH
MPDIIILDVSMPKKDGITAAREIRQRLKIPIILLTACCDPDTVRRAKESGIGGFLAKPLR
CCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHEEEECCCHHHHHHHHHCCCCHHHHHHHH
EQDLWPAIELACAHADEVETLKEEVEDLKEILESRKVIEKAKGVLMRNQGLSEPEAFRRM
HHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
QKLAMDKRKSMRQIAEAILLTE
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEEIAGKNINKAVISLRSVLVCDDEPIIRMSLKNKLKELGFDEIRECGDGEQAVATALAT
CCCCCCCCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHH
MPDIIILDVSMPKKDGITAAREIRQRLKIPIILLTACCDPDTVRRAKESGIGGFLAKPLR
CCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHEEEECCCHHHHHHHHHCCCCHHHHHHHH
EQDLWPAIELACAHADEVETLKEEVEDLKEILESRKVIEKAKGVLMRNQGLSEPEAFRRM
HHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
QKLAMDKRKSMRQIAEAILLTE
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]