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The map label for this gene is ccsA [H]

Identifier: 78221815

GI number: 78221815

Start: 661203

End: 662030

Strand: Direct

Name: ccsA [H]

Synonym: Gmet_0594

Alternate gene names: 78221815

Gene position: 661203-662030 (Clockwise)

Preceding gene: 78221814

Following gene: 78221816

Centisome position: 16.54

GC content: 59.9

Gene sequence:

>828_bases
ATGGAAAGCTCTTTTTCGTCAATAACCATCATCCATTGGGCGGCAGTGGTCATCTACGTGCTCGCCACCATCTTCAACGT
GGCAGGTCTCATCTTCCGCAAGGAACGCGCCACGGGGATCAGCTATCTCCTGGTGGGGGCGGGGCTTCTGGTGCACGGCA
TCGGCATCCTCTGGTGGTGGAAGATTGTCGGGCACGGCCCGTACATCGGCCGGTTCGAGGTCCTCTCTTCCCAGGCATGG
ATGGGGCTTTTCCTCTTCATGGTCTTTGCCCACTTCCTGCCGAAGATAAGGCCGGCGAGCATCCTGGTGTTTCCGGCCGC
CTTCCTGATGATCGCCGTCGGCATCTTCTTCGAGCCCCAGGTGAAGATGCTGCCGCCGACGCTGCGCAGTGTCTGGCTCA
TCCTCCACGTGACCTTCTACAAGATTTCGGTCTGCACGCTCCTGGTGGCCCTGGCCTTTTCCATCTTCTTCATCCTGCGC
AAGCGCACCGGCATCCAGTGGCTTACCCGCCTCCCCGACATGGAGACCATGGATATTCTCGCCTTCCGCTTCGCCGGCTT
CAGCTTCACCTTTTGGGCCATCGCCATGCTGGCGGGGAGCATCTGGGCCTATGAATCGTGGGGGCGCTTCTGGGGGTGGG
ACCCCATCGAGACCTGGTCGCTCATTACCTGGGTGGCCTTCGGTATCTACCTGCACCTGCGGCGCTTCTTCGGGCTGAAG
GGGGAAGCGGCGGCTTACCTCTACATCCTCTGCTTCCTGCTGTCGGTCCTCTCCCTCTTCTTTACGCCGCTGATCGGTGG
CTCGGTCCATTCTGAGTACTTTAAATGA

Upstream 100 bases:

>100_bases
GGCCGCGCCGGCTTCCGGGAAGGCTTCCGTGCGGTAGGCGCCGGTTGACCCGGGGGCGGTACGAATCAACCGGCGATTTT
TTCAGAGAGGTATGCGTTTC

Downstream 100 bases:

>100_bases
TCCCGGCCCATGGCCGCTTTGCCTTGTACCTGGAGAGAACCAATGAGTGATGACCGCCGGCGGGAGCTTTTCGAGACGAT
TCGTGACTACATCACCGACT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MESSFSSITIIHWAAVVIYVLATIFNVAGLIFRKERATGISYLLVGAGLLVHGIGILWWWKIVGHGPYIGRFEVLSSQAW
MGLFLFMVFAHFLPKIRPASILVFPAAFLMIAVGIFFEPQVKMLPPTLRSVWLILHVTFYKISVCTLLVALAFSIFFILR
KRTGIQWLTRLPDMETMDILAFRFAGFSFTFWAIAMLAGSIWAYESWGRFWGWDPIETWSLITWVAFGIYLHLRRFFGLK
GEAAAYLYILCFLLSVLSLFFTPLIGGSVHSEYFK

Sequences:

>Translated_275_residues
MESSFSSITIIHWAAVVIYVLATIFNVAGLIFRKERATGISYLLVGAGLLVHGIGILWWWKIVGHGPYIGRFEVLSSQAW
MGLFLFMVFAHFLPKIRPASILVFPAAFLMIAVGIFFEPQVKMLPPTLRSVWLILHVTFYKISVCTLLVALAFSIFFILR
KRTGIQWLTRLPDMETMDILAFRFAGFSFTFWAIAMLAGSIWAYESWGRFWGWDPIETWSLITWVAFGIYLHLRRFFGLK
GEAAAYLYILCFLLSVLSLFFTPLIGGSVHSEYFK
>Mature_275_residues
MESSFSSITIIHWAAVVIYVLATIFNVAGLIFRKERATGISYLLVGAGLLVHGIGILWWWKIVGHGPYIGRFEVLSSQAW
MGLFLFMVFAHFLPKIRPASILVFPAAFLMIAVGIFFEPQVKMLPPTLRSVWLILHVTFYKISVCTLLVALAFSIFFILR
KRTGIQWLTRLPDMETMDILAFRFAGFSFTFWAIAMLAGSIWAYESWGRFWGWDPIETWSLITWVAFGIYLHLRRFFGLK
GEAAAYLYILCFLLSVLSLFFTPLIGGSVHSEYFK

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 31453; Mature: 31453

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure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CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA