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The map label for this gene is rfaQ [C]

Identifier: 78221806

GI number: 78221806

Start: 650373

End: 651593

Strand: Direct

Name: rfaQ [C]

Synonym: Gmet_0585

Alternate gene names: 78221806

Gene position: 650373-651593 (Clockwise)

Preceding gene: 78221805

Following gene: 78221807

Centisome position: 16.27

GC content: 64.62

Gene sequence:

>1221_bases
ATGAACTGGAAGCTTATCCGCATCATCGATGTCTGGCTGGGGATCCCGATACTTTTCGGGATTTTTGTTGCCGGGCGGCT
CTTCGGGAAGCGGCAGCCGCAGCGGCCGGCCACGGTCAGGCGCATCCTGCTGATCAAGTTCTGGGGGATCGGCAATCTTT
TCATGATGCTCCCGTCGGTTCAGGCGCTGCGTGCGGCCCACCCGGCAGCCGCCATCGATGTTCTCTCGCTGGACAGCAAC
CGGGATGCCATCCGGGCCTGCGGCGTGTTTGACGGCGTCGCCACCATAACCACCGCCGGTCCGCTCCGCTTCCTGTTATC
GTGGCGGCGGGCCGTCGCCCTGCTGAGAAGGAACCGCTACGACATCATCATCGACTTCGAGCAGTTCGCGCGGTTTTCCG
CGCTGGTTGCCGGCCAGATCGGGGCCGCGGAAATTATCGGGTTCCGGACCGAGGGACAGCATCGGAGCCTCAATTTCACC
GTTCAGGTCCCGTACGACAATGCGATCCATGTCACGCGTTCCTTCCATGCCCTCGTTGCGGCTGCCGGAGCGGCACCGGT
TGATCGCCTGCCGGCGGCCGGGATCAGCGGCAGCGAAAATCTGCGCGAACGCGGCAAGGAACTGCTCGCGCAAATCGGAA
TCGGGCCGGATGAGCTCTGCGTCGTCATGCATGCCGGCACCAGTGGCAATTTCAGTGAGCGCCGCTGGCCGCCCGAACGG
TTTTCCTCCCTTGCCGATACGCTTCATGCCGGGCACAATGCCCGCACCATCTTCACCGGAGCGGCTGAAGAGGCCTTTCT
GACCCGTGAAGCGGCAAGGCATCTGCACCGGCCGTTGTCCGCCCTAGATCTGGGGGGAAAGCTGAAATTCCGGGACTACC
TCGCCCTCATCGCGGCTGCCGATCTGGTGGTTTCGGCCGACACGGCGGCCGTGCACATGGCATCGGCGGTCGGAACACCG
GTGGTCGGGCTGTACGGTCCCAACACGCCACGCCTCTACGGCCCGTGGGGAAGGGGGGGCGTGGCCGTCTGTCAGGGACT
TGACTGTAGCCCCTGCATCACCAACTTCAACGCCAAGCTCCATGTCTGTCGCCACCCCGCGGGACGGGGGGCCTGCATGG
GGGCCATCGGGGTGGAAGATGTGGCGGCTGCCATCCGGCGGAATTTCCTGGAGCCGGATGCCCCGTTTCTGCTCACCAGG
CTCTCCGGGGGTATGCGGTGA

Upstream 100 bases:

>100_bases
ATTTTCGGGAGGCCGGCGATGCAACCGGGCCCATTGCGTGGGAGGTGTATTGAGCCATGGAATGCGCTCCCGCCATAGCG
TTGGCTGACGGTAGGGTCGG

Downstream 100 bases:

>100_bases
TGCGCTTCCCGCGGCTGGCATACCGGGTTCTGCGGAGCAACCTGGGGGACCTTCCGGAGCCGTACCGGATGACCTGGGGG
GTCACCAGCCGTTGCCAGGC

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Lipopolysaccharide Heptosyltransferase II; Heptosyltransferase Family Protein; Lipopolysaccharide Heptosyltransferase III; ADP-HeptoseLPS Heptosyltransferase; Lipopolysaccharide Heptosyltransferase; ADP-Heptose-LPS Heptosyltransferase II; Lipopolysaccharide Heptosyltransferase I; Glycosyltransferase; ADP-Heptose-LPS Heptosyltransferase; LPS Biosynthesis; ADP-HeptoseLPS Heptosyltransferase-Like Protein; ADP-Heptose; Family Glycosyltransferase; Heptosyltransferase II; ADP-HeptoseLPS Heptosyltransferase II; Lipopolysaccharide Core Biosynthesis Heptosyltransferase; Family 9 Glycosyl Transferase; Glycosyl Transferase; RfaF ADP-HeptoseLPS Heptosyltransferase; RfaF Protein

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MNWKLIRIIDVWLGIPILFGIFVAGRLFGKRQPQRPATVRRILLIKFWGIGNLFMMLPSVQALRAAHPAAAIDVLSLDSN
RDAIRACGVFDGVATITTAGPLRFLLSWRRAVALLRRNRYDIIIDFEQFARFSALVAGQIGAAEIIGFRTEGQHRSLNFT
VQVPYDNAIHVTRSFHALVAAAGAAPVDRLPAAGISGSENLRERGKELLAQIGIGPDELCVVMHAGTSGNFSERRWPPER
FSSLADTLHAGHNARTIFTGAAEEAFLTREAARHLHRPLSALDLGGKLKFRDYLALIAAADLVVSADTAAVHMASAVGTP
VVGLYGPNTPRLYGPWGRGGVAVCQGLDCSPCITNFNAKLHVCRHPAGRGACMGAIGVEDVAAAIRRNFLEPDAPFLLTR
LSGGMR

Sequences:

>Translated_406_residues
MNWKLIRIIDVWLGIPILFGIFVAGRLFGKRQPQRPATVRRILLIKFWGIGNLFMMLPSVQALRAAHPAAAIDVLSLDSN
RDAIRACGVFDGVATITTAGPLRFLLSWRRAVALLRRNRYDIIIDFEQFARFSALVAGQIGAAEIIGFRTEGQHRSLNFT
VQVPYDNAIHVTRSFHALVAAAGAAPVDRLPAAGISGSENLRERGKELLAQIGIGPDELCVVMHAGTSGNFSERRWPPER
FSSLADTLHAGHNARTIFTGAAEEAFLTREAARHLHRPLSALDLGGKLKFRDYLALIAAADLVVSADTAAVHMASAVGTP
VVGLYGPNTPRLYGPWGRGGVAVCQGLDCSPCITNFNAKLHVCRHPAGRGACMGAIGVEDVAAAIRRNFLEPDAPFLLTR
LSGGMR
>Mature_406_residues
MNWKLIRIIDVWLGIPILFGIFVAGRLFGKRQPQRPATVRRILLIKFWGIGNLFMMLPSVQALRAAHPAAAIDVLSLDSN
RDAIRACGVFDGVATITTAGPLRFLLSWRRAVALLRRNRYDIIIDFEQFARFSALVAGQIGAAEIIGFRTEGQHRSLNFT
VQVPYDNAIHVTRSFHALVAAAGAAPVDRLPAAGISGSENLRERGKELLAQIGIGPDELCVVMHAGTSGNFSERRWPPER
FSSLADTLHAGHNARTIFTGAAEEAFLTREAARHLHRPLSALDLGGKLKFRDYLALIAAADLVVSADTAAVHMASAVGTP
VVGLYGPNTPRLYGPWGRGGVAVCQGLDCSPCITNFNAKLHVCRHPAGRGACMGAIGVEDVAAAIRRNFLEPDAPFLLTR
LSGGMR

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790062, Length=353, Percent_Identity=23.5127478753541, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 43876; Mature: 43876

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWKLIRIIDVWLGIPILFGIFVAGRLFGKRQPQRPATVRRILLIKFWGIGNLFMMLPSV
CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCCHHHHHHCCH
QALRAAHPAAAIDVLSLDSNRDAIRACGVFDGVATITTAGPLRFLLSWRRAVALLRRNRY
HHHHHCCCHHEEEEEEECCCCCHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHCCCC
DIIIDFEQFARFSALVAGQIGAAEIIGFRTEGQHRSLNFTVQVPYDNAIHVTRSFHALVA
EEEEEHHHHHHHHHHHHCCCCHHHEEEEECCCCCCEEEEEEEECCCCEEEHHHHHHHHHH
AAGAAPVDRLPAAGISGSENLRERGKELLAQIGIGPDELCVVMHAGTSGNFSERRWPPER
HCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHCCCCHHH
FSSLADTLHAGHNARTIFTGAAEEAFLTREAARHLHRPLSALDLGGKLKFRDYLALIAAA
HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHH
DLVVSADTAAVHMASAVGTPVVGLYGPNTPRLYGPWGRGGVAVCQGLDCSPCITNFNAKL
HHHEECCHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCHHHHCCCCCCHHHHCCCCEE
HVCRHPAGRGACMGAIGVEDVAAAIRRNFLEPDAPFLLTRLSGGMR
EEEECCCCCCCEEECCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MNWKLIRIIDVWLGIPILFGIFVAGRLFGKRQPQRPATVRRILLIKFWGIGNLFMMLPSV
CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCCHHHHHHCCH
QALRAAHPAAAIDVLSLDSNRDAIRACGVFDGVATITTAGPLRFLLSWRRAVALLRRNRY
HHHHHCCCHHEEEEEEECCCCCHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHCCCC
DIIIDFEQFARFSALVAGQIGAAEIIGFRTEGQHRSLNFTVQVPYDNAIHVTRSFHALVA
EEEEEHHHHHHHHHHHHCCCCHHHEEEEECCCCCCEEEEEEEECCCCEEEHHHHHHHHHH
AAGAAPVDRLPAAGISGSENLRERGKELLAQIGIGPDELCVVMHAGTSGNFSERRWPPER
HCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHCCCCHHH
FSSLADTLHAGHNARTIFTGAAEEAFLTREAARHLHRPLSALDLGGKLKFRDYLALIAAA
HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHH
DLVVSADTAAVHMASAVGTPVVGLYGPNTPRLYGPWGRGGVAVCQGLDCSPCITNFNAKL
HHHEECCHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCHHHHCCCCCCHHHHCCCCEE
HVCRHPAGRGACMGAIGVEDVAAAIRRNFLEPDAPFLLTRLSGGMR
EEEECCCCCCCEEECCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA