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The map label for this gene is petB [H]

Identifier: 78221760

GI number: 78221760

Start: 578804

End: 579424

Strand: Direct

Name: petB [H]

Synonym: Gmet_0539

Alternate gene names: 78221760

Gene position: 578804-579424 (Clockwise)

Preceding gene: 78221759

Following gene: 78221762

Centisome position: 14.48

GC content: 63.77

Gene sequence:

>621_bases
ATGATCAAGGAATTTGCCAAACATCTCTTCCCCCGGGTGGTGCTGCGGGAGAACCTGCGGTTCACCTACACCTTCTGTCT
GGGGGGACTCGCCTTCACGGCGCTCATCGCTCTGGCCGTGTCCGGGGTGCTGCTCCTGTTCTATTACCAGCCGACACCCG
CCGGGGCCTTTGACTCCATCCTCTTCCTGGAATCGACGGTCGTTGGCGGGAAGTACCTGCGGGGACTCCACCGGCTTGCC
TCCCACGGACTTTTGGTCCTGCTGTTCCTCCATGTCCTTCGGGTGGTGCTCTCCGGCGCCTACCGGCCGCCGCGGGAGCT
AACCTGGGTGGTGGGGGTGGGGCTTCTGGCGCTGTCGGTGTTCGAGGCGTACACCGGCTATCTCCTCCCCATGGACCAGT
TGGCCTTCTGGGCGACCCGAACCGGTATGGAGCTTCTGGCCACCCTGCCTGGAGGTCCGTGGCTGAAGGCCGTCCTCGTC
CCCGACGGAGTGGGGGAACCCCTGTCGCTGCTGCGCTTTTACGCGCTCCATGTGGTAGTTGTCCCCGTGGCGGTGCTGGC
CCTGTCGTTTCTCCACTTCTACCGGGTGCGCAAGACAAAGGGGATACTGCCGTATCTGTGA

Upstream 100 bases:

>100_bases
GCTTCGACCTCAAGGGCAATGTTCTGAAAGGGCCGGCCGACCGGCCCCTGGCCCGCCACCGGCTTGAAATCCGTGGTGGG
AGGGTGGAGATTTATCCGGG

Downstream 100 bases:

>100_bases
GGGCTCAATGGCTGAAAGGATGGAAGTGAAAAACGACTTGAGGCGGGGACCGCGCGGCAGTGGCGAATACGTAAGGAGTT
CCCCCCACTTTTTTCGCCTC

Product: cytochrome b/b6-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MIKEFAKHLFPRVVLRENLRFTYTFCLGGLAFTALIALAVSGVLLLFYYQPTPAGAFDSILFLESTVVGGKYLRGLHRLA
SHGLLVLLFLHVLRVVLSGAYRPPRELTWVVGVGLLALSVFEAYTGYLLPMDQLAFWATRTGMELLATLPGGPWLKAVLV
PDGVGEPLSLLRFYALHVVVVPVAVLALSFLHFYRVRKTKGILPYL

Sequences:

>Translated_206_residues
MIKEFAKHLFPRVVLRENLRFTYTFCLGGLAFTALIALAVSGVLLLFYYQPTPAGAFDSILFLESTVVGGKYLRGLHRLA
SHGLLVLLFLHVLRVVLSGAYRPPRELTWVVGVGLLALSVFEAYTGYLLPMDQLAFWATRTGMELLATLPGGPWLKAVLV
PDGVGEPLSLLRFYALHVVVVPVAVLALSFLHFYRVRKTKGILPYL
>Mature_206_residues
MIKEFAKHLFPRVVLRENLRFTYTFCLGGLAFTALIALAVSGVLLLFYYQPTPAGAFDSILFLESTVVGGKYLRGLHRLA
SHGLLVLLFLHVLRVVLSGAYRPPRELTWVVGVGLLALSVFEAYTGYLLPMDQLAFWATRTGMELLATLPGGPWLKAVLV
PDGVGEPLSLLRFYALHVVVVPVAVLALSFLHFYRVRKTKGILPYL

Specific function: Component of the cytochrome bc complex which donates electrons to the photosynthetic reaction center [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetB subfamily [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=200, Percent_Identity=28.5, Blast_Score=72, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6226532, Length=173, Percent_Identity=27.1676300578035, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 22830; Mature: 22830

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS51002 CYTB_NTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKEFAKHLFPRVVLRENLRFTYTFCLGGLAFTALIALAVSGVLLLFYYQPTPAGAFDSI
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHH
LFLESTVVGGKYLRGLHRLASHGLLVLLFLHVLRVVLSGAYRPPRELTWVVGVGLLALSV
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
FEAYTGYLLPMDQLAFWATRTGMELLATLPGGPWLKAVLVPDGVGEPLSLLRFYALHVVV
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
VPVAVLALSFLHFYRVRKTKGILPYL
HHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIKEFAKHLFPRVVLRENLRFTYTFCLGGLAFTALIALAVSGVLLLFYYQPTPAGAFDSI
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHH
LFLESTVVGGKYLRGLHRLASHGLLVLLFLHVLRVVLSGAYRPPRELTWVVGVGLLALSV
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
FEAYTGYLLPMDQLAFWATRTGMELLATLPGGPWLKAVLVPDGVGEPLSLLRFYALHVVV
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
VPVAVLALSFLHFYRVRKTKGILPYL
HHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA