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The map label for this gene is ykoX [H]

Identifier: 78221723

GI number: 78221723

Start: 544506

End: 545129

Strand: Reverse

Name: ykoX [H]

Synonym: Gmet_0502

Alternate gene names: 78221723

Gene position: 545129-544506 (Counterclockwise)

Preceding gene: 78221728

Following gene: 78221722

Centisome position: 13.64

GC content: 58.81

Gene sequence:

>624_bases
ATGCAACAGATCATCGACTGGCTCCTGGCCACCATCGGCACCATGGGCTACCCCGGCATCTTCATCCTCATGGCCATGGA
AAGCTCCGTCATCCCCATACCGAGCGAACTGGTGATGCCGCCTGCCGGATACCTGGCCCAGCAGGGGGAGATGAACATCT
GGGTAGCCATCCTCCTGGGGACGGTGGGGAGCCTCGTGGGTGCCTACGTCAACTACTTTGCCGCCCACTGGCTGGGGCGT
CCCCTGCTTCTGAAATACGGAAAGTATGTCTGGATCACCGAAGAGAAGTTCGCAAAAGTTGAAACATTCTTCCACAAGCA
CGGCGAGATTTCAACCTTCATCGGCCGCCTCCTCCCGGTGATCCGGCACCTGATCTCGCTCCCGGCAGGGCTTGCCGGAA
TGCATCACGGGAAATTCGCCTTCTACACCGTTGCAGGGGCATTCTTCTGGGTGACGATCCTCACCTGGATCGGCTACGTC
ATCGGCGAAAATCGGGAGCTCATCATGAAGTACTCCCACCAGGCGCTGATCGGGGTCATCATCTTCTGCGTCGTGCTGGT
GGTGGTCTACGTGCGGCGACACCGGCGGAAAAGCCTGAGCACTGACGCAGCAAGGGAGAGATAA

Upstream 100 bases:

>100_bases
ATCTGCTTATCCATTGATTCTCCTGCTTTTTCTGGCCTCAATGGCCCGAACTGTGCTATAAAAATGTGCTTCACCTAACC
CCACGGAAGGACATTTTCCC

Downstream 100 bases:

>100_bases
CCGCCGTGACACAGCAGGGCGCCATCAAGACGAGGCTCATCCTGATCGAAGATGAACCGGGGCATACGAGGCTCATCACC
AAGAACCTGATGAAAAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MQQIIDWLLATIGTMGYPGIFILMAMESSVIPIPSELVMPPAGYLAQQGEMNIWVAILLGTVGSLVGAYVNYFAAHWLGR
PLLLKYGKYVWITEEKFAKVETFFHKHGEISTFIGRLLPVIRHLISLPAGLAGMHHGKFAFYTVAGAFFWVTILTWIGYV
IGENRELIMKYSHQALIGVIIFCVVLVVVYVRRHRRKSLSTDAARER

Sequences:

>Translated_207_residues
MQQIIDWLLATIGTMGYPGIFILMAMESSVIPIPSELVMPPAGYLAQQGEMNIWVAILLGTVGSLVGAYVNYFAAHWLGR
PLLLKYGKYVWITEEKFAKVETFFHKHGEISTFIGRLLPVIRHLISLPAGLAGMHHGKFAFYTVAGAFFWVTILTWIGYV
IGENRELIMKYSHQALIGVIIFCVVLVVVYVRRHRRKSLSTDAARER
>Mature_207_residues
MQQIIDWLLATIGTMGYPGIFILMAMESSVIPIPSELVMPPAGYLAQQGEMNIWVAILLGTVGSLVGAYVNYFAAHWLGR
PLLLKYGKYVWITEEKFAKVETFFHKHGEISTFIGRLLPVIRHLISLPAGLAGMHHGKFAFYTVAGAFFWVTILTWIGYV
IGENRELIMKYSHQALIGVIIFCVVLVVVYVRRHRRKSLSTDAARER

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789481, Length=166, Percent_Identity=29.5180722891566, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788656, Length=192, Percent_Identity=25, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1789384, Length=146, Percent_Identity=25.3424657534247, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23341; Mature: 23341

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQIIDWLLATIGTMGYPGIFILMAMESSVIPIPSELVMPPAGYLAQQGEMNIWVAILLG
CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHCCCCCHHHHCCCCCHHHHHHHHH
TVGSLVGAYVNYFAAHWLGRPLLLKYGKYVWITEEKFAKVETFFHKHGEISTFIGRLLPV
HHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHH
IRHLISLPAGLAGMHHGKFAFYTVAGAFFWVTILTWIGYVIGENRELIMKYSHQALIGVI
HHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IFCVVLVVVYVRRHRRKSLSTDAARER
HHHHHHHHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure
MQQIIDWLLATIGTMGYPGIFILMAMESSVIPIPSELVMPPAGYLAQQGEMNIWVAILLG
CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHCCCCCHHHHCCCCCHHHHHHHHH
TVGSLVGAYVNYFAAHWLGRPLLLKYGKYVWITEEKFAKVETFFHKHGEISTFIGRLLPV
HHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHH
IRHLISLPAGLAGMHHGKFAFYTVAGAFFWVTILTWIGYVIGENRELIMKYSHQALIGVI
HHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IFCVVLVVVYVRRHRRKSLSTDAARER
HHHHHHHHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]