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The map label for this gene is bphB [H]

Identifier: 78221721

GI number: 78221721

Start: 542971

End: 544071

Strand: Reverse

Name: bphB [H]

Synonym: Gmet_0500

Alternate gene names: 78221721

Gene position: 544071-542971 (Counterclockwise)

Preceding gene: 78221722

Following gene: 78221720

Centisome position: 13.61

GC content: 61.13

Gene sequence:

>1101_bases
ATGTCCGGCAGCGGGAGCACACATCCCACCCTTGTGGTGGCGGCCGACGGAAAGATCATCGAGGCAAACGATGCGTTCAC
CCTCCTTTCCGGCTACCGAGCGGAAGCGGTCACCGGCCGCTTGTTCCATGAAGTCGTCCTTTGCGCAGACGGAGCCCCCG
GCATTGCCAGCATGGAGACCCTCAGCGGGGTGGAGCTGAGAAAGGCTTCCGGAGCGCGACTGTCCCTGCTTGCCGTCGTT
TCCCCCATGCTCGGCCAGAACCTCGCCCCCTACCGCTACATCGTGAAACTTATCGAATGCAGGGAGATACCGGAGGTGGC
GCAGACCCTTGCCGCCACAGAATCCCGCCTGGAGGTCTCCGAACGGGAACTGCAGACGTTCGTCTCCAGCGTCTCCCACG
ATCTCCGCTCGCCCGTGGTGAGCATCAAGGGCTTCACCGGCGAACTGCGGGGCCTTACAGAAAATTTCATGAGGCAGATC
GGCAAGGCGCCGGATCTCTCCCCGGAATCCGAGGCGCTGTTCACCCAGTATCGCGAGGAAATGCTCGAAGCCATCGGCTT
TGTGGAATCAAGCGCGAAGCGGGTCGAACGCCTGGTCAATCTGCTGGTTGTCTTCTCCAAGCTGGAAGGGATACCGTTGA
ACGACCAGCGCGTGGATATGGCCGGCCTCTTCCGGAGCGTCCTCACCTCCATGCGCCACCGGATCGGGCAGAAGGACTGC
CAGATCTCCATGGAAGCGGTGTTTCCCTCCCTGATGATCGATCCCACCGTGACCGAGCGGATATTCAGCAACATCCTCGA
CAATGCCGTCAAGTATCTCGACCCCTCCCGTCCCGGGGCCATAACGATCAAAGCCGGTGAAAATGACCGGGAAGTGATCT
TCTCGATACGCGACAACGGCATCGGCATTGCCGAATACAACAGGCACAAGGTGTTCATGTTCTTCAGGCGCGCCACCGAC
CTGGACATCCCCGGCGACGGCGTCGGCATGCCCCTGGCGAGGGCGCTCCTCAAGCGCTACCGGGGCCGCATCTGGTTCGA
ATCCCTGGAAGGAACAGGGACAACCTTTCACGTCGCATTCCCCAAGACCCTCGTGGTCTGA

Upstream 100 bases:

>100_bases
GGCCAACCTCTATCTGGTCAAGCCCATGGACTACACGGCCTTTCAAGTGACGATCGACTTCCTCGCCGCAACCCTCACGA
TGATGAGGCTTCCCTAGGGG

Downstream 100 bases:

>100_bases
AGCAATTCACCGGCATCCATGGTTTTCCCTCACTTTTTCCGCATACCCTGCTCGTGTCTCCTCCTCTGCGCCCTGTCCCT
GGCCGCGGGTCCCAGCGCCC

Product: PAS/PAC sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MSGSGSTHPTLVVAADGKIIEANDAFTLLSGYRAEAVTGRLFHEVVLCADGAPGIASMETLSGVELRKASGARLSLLAVV
SPMLGQNLAPYRYIVKLIECREIPEVAQTLAATESRLEVSERELQTFVSSVSHDLRSPVVSIKGFTGELRGLTENFMRQI
GKAPDLSPESEALFTQYREEMLEAIGFVESSAKRVERLVNLLVVFSKLEGIPLNDQRVDMAGLFRSVLTSMRHRIGQKDC
QISMEAVFPSLMIDPTVTERIFSNILDNAVKYLDPSRPGAITIKAGENDREVIFSIRDNGIGIAEYNRHKVFMFFRRATD
LDIPGDGVGMPLARALLKRYRGRIWFESLEGTGTTFHVAFPKTLVV

Sequences:

>Translated_366_residues
MSGSGSTHPTLVVAADGKIIEANDAFTLLSGYRAEAVTGRLFHEVVLCADGAPGIASMETLSGVELRKASGARLSLLAVV
SPMLGQNLAPYRYIVKLIECREIPEVAQTLAATESRLEVSERELQTFVSSVSHDLRSPVVSIKGFTGELRGLTENFMRQI
GKAPDLSPESEALFTQYREEMLEAIGFVESSAKRVERLVNLLVVFSKLEGIPLNDQRVDMAGLFRSVLTSMRHRIGQKDC
QISMEAVFPSLMIDPTVTERIFSNILDNAVKYLDPSRPGAITIKAGENDREVIFSIRDNGIGIAEYNRHKVFMFFRRATD
LDIPGDGVGMPLARALLKRYRGRIWFESLEGTGTTFHVAFPKTLVV
>Mature_365_residues
SGSGSTHPTLVVAADGKIIEANDAFTLLSGYRAEAVTGRLFHEVVLCADGAPGIASMETLSGVELRKASGARLSLLAVVS
PMLGQNLAPYRYIVKLIECREIPEVAQTLAATESRLEVSERELQTFVSSVSHDLRSPVVSIKGFTGELRGLTENFMRQIG
KAPDLSPESEALFTQYREEMLEAIGFVESSAKRVERLVNLLVVFSKLEGIPLNDQRVDMAGLFRSVLTSMRHRIGQKDCQ
ISMEAVFPSLMIDPTVTERIFSNILDNAVKYLDPSRPGAITIKAGENDREVIFSIRDNGIGIAEYNRHKVFMFFRRATDL
DIPGDGVGMPLARALLKRYRGRIWFESLEGTGTTFHVAFPKTLVV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788713, Length=287, Percent_Identity=23.3449477351916, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI48994928, Length=250, Percent_Identity=24.8, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789149, Length=273, Percent_Identity=27.1062271062271, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790861, Length=258, Percent_Identity=23.6434108527132, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082128, Length=268, Percent_Identity=20.8955223880597, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 40326; Mature: 40195

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGSGSTHPTLVVAADGKIIEANDAFTLLSGYRAEAVTGRLFHEVVLCADGAPGIASMET
CCCCCCCCCEEEEEECCEEEECCCCCHHHHCCHHHHHHHHHHHHHHEECCCCCCCCHHHH
LSGVELRKASGARLSLLAVVSPMLGQNLAPYRYIVKLIECREIPEVAQTLAATESRLEVS
HCCCHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ERELQTFVSSVSHDLRSPVVSIKGFTGELRGLTENFMRQIGKAPDLSPESEALFTQYREE
HHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
MLEAIGFVESSAKRVERLVNLLVVFSKLEGIPLNDQRVDMAGLFRSVLTSMRHRIGQKDC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHH
QISMEAVFPSLMIDPTVTERIFSNILDNAVKYLDPSRPGAITIKAGENDREVIFSIRDNG
CEEHHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCC
IGIAEYNRHKVFMFFRRATDLDIPGDGVGMPLARALLKRYRGRIWFESLEGTGTTFHVAF
EEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEC
PKTLVV
CHHHCC
>Mature Secondary Structure 
SGSGSTHPTLVVAADGKIIEANDAFTLLSGYRAEAVTGRLFHEVVLCADGAPGIASMET
CCCCCCCCEEEEEECCEEEECCCCCHHHHCCHHHHHHHHHHHHHHEECCCCCCCCHHHH
LSGVELRKASGARLSLLAVVSPMLGQNLAPYRYIVKLIECREIPEVAQTLAATESRLEVS
HCCCHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ERELQTFVSSVSHDLRSPVVSIKGFTGELRGLTENFMRQIGKAPDLSPESEALFTQYREE
HHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
MLEAIGFVESSAKRVERLVNLLVVFSKLEGIPLNDQRVDMAGLFRSVLTSMRHRIGQKDC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHH
QISMEAVFPSLMIDPTVTERIFSNILDNAVKYLDPSRPGAITIKAGENDREVIFSIRDNG
CEEHHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCC
IGIAEYNRHKVFMFFRRATDLDIPGDGVGMPLARALLKRYRGRIWFESLEGTGTTFHVAF
EEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEC
PKTLVV
CHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]