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The map label for this gene is csrA

Identifier: 78221661

GI number: 78221661

Start: 485123

End: 485359

Strand: Direct

Name: csrA

Synonym: Gmet_0440

Alternate gene names: 78221661

Gene position: 485123-485359 (Clockwise)

Preceding gene: 78221660

Following gene: 78221662

Centisome position: 12.14

GC content: 56.54

Gene sequence:

>237_bases
ATGCTGGTATTAACGAGAAAAATGGGCGAAACGATCACTATCGGCGATCAGATCAGGATCAAGGTGGTGGAGATGAAGGG
GAACCAGGTGCGGCTCGGCATCGAGGCTCCCGGCGACATGCGCATCTACCGGGAGGAGATCTACCTCAAGGTCCAGAAGG
AAAACCAACTGGCGGCCGCCTGGAGCCTGGAAGACCTTGAGAGTGCAGTCAACTTTGCCGGTGCCGGGAAGGAGTAA

Upstream 100 bases:

>100_bases
ACGGCATATCAGGCGGCAGTGGCTGCTTCGGCAAAGGTTTCACAGGTTTCGCTTCTCGACTACCTCAGGTAAGAGGGGGA
GCGCCAGGAGGGCACAATTT

Downstream 100 bases:

>100_bases
CGTATTGTGAAAATTGAAACCTCTCGTTTTGGGCTGCTTGACATTGATGACGATAAGATCATAACTCTGCCGGACGCCAT
GCCGGGCTTTGCCGAGACCC

Product: carbon storage regulator, CsrA/carbon storage regulator, CsrA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MLVLTRKMGETITIGDQIRIKVVEMKGNQVRLGIEAPGDMRIYREEIYLKVQKENQLAAAWSLEDLESAVNFAGAGKE

Sequences:

>Translated_78_residues
MLVLTRKMGETITIGDQIRIKVVEMKGNQVRLGIEAPGDMRIYREEIYLKVQKENQLAAAWSLEDLESAVNFAGAGKE
>Mature_78_residues
MLVLTRKMGETITIGDQIRIKVVEMKGNQVRLGIEAPGDMRIYREEIYLKVQKENQLAAAWSLEDLESAVNFAGAGKE

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=61, Percent_Identity=45.9016393442623, Blast_Score=70, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_GEOMG (Q39YJ1)

Other databases:

- EMBL:   CP000148
- RefSeq:   YP_383408.1
- ProteinModelPortal:   Q39YJ1
- SMR:   Q39YJ1
- STRING:   Q39YJ1
- GeneID:   3738371
- GenomeReviews:   CP000148_GR
- KEGG:   gme:Gmet_0440
- NMPDR:   fig|269799.3.peg.468
- eggNOG:   COG1551
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- PhylomeDB:   Q39YJ1
- ProtClustDB:   CLSK829069
- BioCyc:   GMET269799:GMET_0440-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8765; Mature: 8765

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLTRKMGETITIGDQIRIKVVEMKGNQVRLGIEAPGDMRIYREEIYLKVQKENQLAAA
CEEEECCCCCEEEECCEEEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCCEEEE
WSLEDLESAVNFAGAGKE
ECHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLVLTRKMGETITIGDQIRIKVVEMKGNQVRLGIEAPGDMRIYREEIYLKVQKENQLAAA
CEEEECCCCCEEEECCEEEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCCEEEE
WSLEDLESAVNFAGAGKE
ECHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA