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The map label for this gene is ssb [H]

Identifier: 78221583

GI number: 78221583

Start: 406141

End: 406584

Strand: Reverse

Name: ssb [H]

Synonym: Gmet_0362

Alternate gene names: 78221583

Gene position: 406584-406141 (Counterclockwise)

Preceding gene: 78221590

Following gene: 78221579

Centisome position: 10.17

GC content: 66.67

Gene sequence:

>444_bases
ATGGCAAGTCTCAACAAGGTAATGCTCATCGGCAATCTCGGCAAGGACCCCGAAGTCCGCTACACCCCGGGCGGTACGGC
GGTGGCCAGCTTCTCCCTCGCCACCAGCGAGAAGTTCAAGAACAGGAACGGCGAGTTCGAGGAGAAGACCGAGTGGCACA
ACGTGGTCCTCTGGGGGCGCCAGGCGGAGATCGCCGGCGAGTACCTGGCAAAGGGGCGGACCGTCTTCATCGAGGGGCGG
CTCCAGACCCGCAAGTGGCAGGACAAGGAAGGCCGCGACCGCTGGTCCACCGAGGTGGTGGGGGAGCGGATGCAGATGCT
CGGCGGCAAGGGCGAAGGGGGCGGCGGGCGCTCCGGCGGACGCGGCGGCCAGGAAGGCGGCTTCGGCGGCGGCCCGGCCT
ACGACGAACCTGCCTTCAACCCGGATGACGATATTCCGTTTTAA

Upstream 100 bases:

>100_bases
CCATCCTTCGTCAAACCAAATATAGCTTGCCAGAATCCCCCCAATTCCTATACACTGCAGCGGTTTTCGGCATACATCAA
CGCCCCGAAGGAGGGCTCCC

Downstream 100 bases:

>100_bases
CCCCGGTAGCCTGAAACCTTGAACGCATGAAAGCCGCAGTTCACCGAAACTGCGGCTTTCATGCGTTCAGGAGGATAGTC
CAGGATTATCAGCCGGCCAT

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MASLNKVMLIGNLGKDPEVRYTPGGTAVASFSLATSEKFKNRNGEFEEKTEWHNVVLWGRQAEIAGEYLAKGRTVFIEGR
LQTRKWQDKEGRDRWSTEVVGERMQMLGGKGEGGGGRSGGRGGQEGGFGGGPAYDEPAFNPDDDIPF

Sequences:

>Translated_147_residues
MASLNKVMLIGNLGKDPEVRYTPGGTAVASFSLATSEKFKNRNGEFEEKTEWHNVVLWGRQAEIAGEYLAKGRTVFIEGR
LQTRKWQDKEGRDRWSTEVVGERMQMLGGKGEGGGGRSGGRGGQEGGFGGGPAYDEPAFNPDDDIPF
>Mature_146_residues
ASLNKVMLIGNLGKDPEVRYTPGGTAVASFSLATSEKFKNRNGEFEEKTEWHNVVLWGRQAEIAGEYLAKGRTVFIEGRL
QTRKWQDKEGRDRWSTEVVGERMQMLGGKGEGGGGRSGGRGGQEGGFGGGPAYDEPAFNPDDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=117, Percent_Identity=29.0598290598291, Blast_Score=65, Evalue=3e-11,
Organism=Escherichia coli, GI1790494, Length=179, Percent_Identity=46.927374301676, Blast_Score=142, Evalue=1e-35,
Organism=Drosophila melanogaster, GI85725234, Length=101, Percent_Identity=29.7029702970297, Blast_Score=63, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24647376, Length=101, Percent_Identity=29.7029702970297, Blast_Score=63, Evalue=7e-11,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 16028; Mature: 15897

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLNKVMLIGNLGKDPEVRYTPGGTAVASFSLATSEKFKNRNGEFEEKTEWHNVVLWGR
CCCCCEEEEEECCCCCCCEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEECC
QAEIAGEYLAKGRTVFIEGRLQTRKWQDKEGRDRWSTEVVGERMQMLGGKGEGGGGRSGG
CHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RGGQEGGFGGGPAYDEPAFNPDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASLNKVMLIGNLGKDPEVRYTPGGTAVASFSLATSEKFKNRNGEFEEKTEWHNVVLWGR
CCCCEEEEEECCCCCCCEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEECC
QAEIAGEYLAKGRTVFIEGRLQTRKWQDKEGRDRWSTEVVGERMQMLGGKGEGGGGRSGG
CHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RGGQEGGFGGGPAYDEPAFNPDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12700255 [H]