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The map label for this gene is slyA [H]

Identifier: 78221580

GI number: 78221580

Start: 404402

End: 404866

Strand: Direct

Name: slyA [H]

Synonym: Gmet_0359

Alternate gene names: 78221580

Gene position: 404402-404866 (Clockwise)

Preceding gene: 78221578

Following gene: 78221581

Centisome position: 10.12

GC content: 59.78

Gene sequence:

>465_bases
ATGAACCTGTCTGACGAAAAAATTGGTCGCAGCAACCTCTTTTATCGGCTCGGTCTCCTGACACGGCACTGGCGCCAGGT
CCTGGATACTGACTTCCAGTTTGCCGGCTTGACCGACGCCACCTGGCGTCCCCTCCTTCACCTCCATCTCCTCGGTGATG
GGACTCGGCAGAAGGATTTGGCAGCGTCGATCGGCATCGAGGGGCCCTCACTCGTCCGTCTCCTCGATACCCTTATCGCC
AAAGGGCTGATAGAGCGTTTAGAAGATGTCACGGACCGCCGGGCGAAGCTGCTCAACCTGACTCCCGAGGGCCGCGTGAT
TGTGGCTCGGATCCAGGAAACGGTGACGGCCCTGGAAAACGATCTCCTCAGCCCCTTCAGCGACGACGAGATTGCCCGGG
TGGCGGAATTCATCGAACGGCTTGAATCCACCGTGAACGAGGCCCGGCGGAGGGGAAAGAGATGA

Upstream 100 bases:

>100_bases
GGACCCGGGCTGGTTGTCCCAACATAGTTGACGCGGAGTGCAGAGTGTACCAGCAGGAAAATAAATTGTGAACAAATAAA
TAGTATGCTATTTATATTGC

Downstream 100 bases:

>100_bases
TGCGTCGCGCAGTCCTGCCGATCCTGTGGCCGCGCCTCGCGCCGTGGCGGGACTTCAGGGGAGCATCATGCCCTATCTGA
GATTCAAGGGATTCGACGAG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MNLSDEKIGRSNLFYRLGLLTRHWRQVLDTDFQFAGLTDATWRPLLHLHLLGDGTRQKDLAASIGIEGPSLVRLLDTLIA
KGLIERLEDVTDRRAKLLNLTPEGRVIVARIQETVTALENDLLSPFSDDEIARVAEFIERLESTVNEARRRGKR

Sequences:

>Translated_154_residues
MNLSDEKIGRSNLFYRLGLLTRHWRQVLDTDFQFAGLTDATWRPLLHLHLLGDGTRQKDLAASIGIEGPSLVRLLDTLIA
KGLIERLEDVTDRRAKLLNLTPEGRVIVARIQETVTALENDLLSPFSDDEIARVAEFIERLESTVNEARRRGKR
>Mature_154_residues
MNLSDEKIGRSNLFYRLGLLTRHWRQVLDTDFQFAGLTDATWRPLLHLHLLGDGTRQKDLAASIGIEGPSLVRLLDTLIA
KGLIERLEDVTDRRAKLLNLTPEGRVIVARIQETVTALENDLLSPFSDDEIARVAEFIERLESTVNEARRRGKR

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=142, Percent_Identity=34.5070422535211, Blast_Score=80, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17514; Mature: 17514

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSDEKIGRSNLFYRLGLLTRHWRQVLDTDFQFAGLTDATWRPLLHLHLLGDGTRQKDL
CCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHH
AASIGIEGPSLVRLLDTLIAKGLIERLEDVTDRRAKLLNLTPEGRVIVARIQETVTALEN
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
DLLSPFSDDEIARVAEFIERLESTVNEARRRGKR
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLSDEKIGRSNLFYRLGLLTRHWRQVLDTDFQFAGLTDATWRPLLHLHLLGDGTRQKDL
CCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHH
AASIGIEGPSLVRLLDTLIAKGLIERLEDVTDRRAKLLNLTPEGRVIVARIQETVTALEN
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
DLLSPFSDDEIARVAEFIERLESTVNEARRRGKR
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA