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The map label for this gene is nrfD [C]

Identifier: 78221548

GI number: 78221548

Start: 363229

End: 364482

Strand: Direct

Name: nrfD [C]

Synonym: Gmet_0327

Alternate gene names: 78221548

Gene position: 363229-364482 (Clockwise)

Preceding gene: 78221547

Following gene: 78221549

Centisome position: 9.09

GC content: 61.24

Gene sequence:

>1254_bases
ATGGTACACGGTGAAGCATGGACGCTGAAAGAGTTGTTCGTCTACCCCAACGAGTACATCTACTGGACCATCCAGATCGT
CATGTACCCGTTCATGACCGGCCTCGTGGCCGGCGCCTTTGTCCTTTCCTCCCTCTATCACGTCTTCGGGATCAAGCAGC
TGAAGGATATCGCGCGGTTTTCACTGGTCTTCTCCTTCGCCCTCCTCCCCGTGGCGATGATCCCGCTCCAACTCCATCTC
CAGCACCCGGAACGGGGGATCGAGGTGATGCTGACACCCCACTTCACCTCGGCCATTGCCGCCTTCGGCATCGCCTTCTC
CACCTACGGCATGATCGTCGCCTCGGAGCTTTGGTTCGTCTACCGGCGGCACTTCGTGGAGACGGCCCTGGCGCTTAGGG
AAAAGCGGGACAAAACCATCCCCGAGCGGGGACGGCAGCTCCTCTTTTCGGCCCTCACCCTCGGTGCCTGGGACATCAGC
GAGCAGGCTCTGGCAAAGGATGAACGGGCCGTGAAGATCATGGCGACTGCCGGGATTCCGGTGGCCTGCCTCCTCCACGG
CTATGCCGGATTTATTTTCGGCTCCGTGAAGGCCAATGCCCTCTGGACGACCCCCCTCATGCCCTTCATCTTCATCTGCT
CCGCCGTGGTGTCGGGGATCGCCCTCTGCGTCCTCAGCTACATCGTGACCATGGAGGTCCGCAAGCTCATGGTCGCCTGG
AGGAGGAAGAGCGACCCGAGCCTCCCCACTCCGGACGAGATCAGGACCGTGGAGATGTACGAGGTCACCATGACCGCAAA
ATACCTGGTCCTGGCCCTCCTGGCGGCCCTGGGGCTGGAGCTTCTGGACCTCCTCTTTCGGGACTACGCCAAGTTCAGCT
CGTGGGAGATCGTGCGGAGCCTCATCTACGGCAAGGATTTCGTCAATGTCTTCGTGATCCAGTACGGGATCGGCAACCTG
GTCCCCCTGGCCCTCTTCCTCCTGCCGCGGCTCACGGTGCGACGGGCGGTCGTGGCCACGCTCCTGGTCCTCATGGGGGT
CTTCATGATGCGGTGGAACCTGGTCATCGGCGGCCAGGCCTTCTCGGCCTCCTTTTCCGGCTACATGCACTACGAGCTTC
CGATCATCCCCCACGACATCGAGACCTTCAAGGAGGGGCTCCTGGGTGCCCTGCTGGTGGGGGTGCTGCCGTTCATCTTT
TTCTGGGGGCTGAACAAGATTTTCCCGGTTTTCAAGTGCGAGGATACCCACTGA

Upstream 100 bases:

>100_bases
CGAAGACCATCATGTCGGGACGGGTCGGCGTCCTGAAGGAGCAGTACGGCACCAAGCCGCAGGTCTACTATCTCGCTCTT
TCCCGGGAGGTGAAATAGCC

Downstream 100 bases:

>100_bases
GAAAAAGTTTGGCGCCAATTTTGATTACTTGACTAAAGTCAAGGCAGCAAGGTTGCAAAACGCTATTTTACGGATAGACT
CTACTTAGGCTAATGTGTCG

Product: polysulphide reductase, NrfD

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: Molybdopterin Oxidoreductase Membrane Subunit; Oxidoreductase Membrane Subunit; Polysulphide Reductase Nrfd

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MVHGEAWTLKELFVYPNEYIYWTIQIVMYPFMTGLVAGAFVLSSLYHVFGIKQLKDIARFSLVFSFALLPVAMIPLQLHL
QHPERGIEVMLTPHFTSAIAAFGIAFSTYGMIVASELWFVYRRHFVETALALREKRDKTIPERGRQLLFSALTLGAWDIS
EQALAKDERAVKIMATAGIPVACLLHGYAGFIFGSVKANALWTTPLMPFIFICSAVVSGIALCVLSYIVTMEVRKLMVAW
RRKSDPSLPTPDEIRTVEMYEVTMTAKYLVLALLAALGLELLDLLFRDYAKFSSWEIVRSLIYGKDFVNVFVIQYGIGNL
VPLALFLLPRLTVRRAVVATLLVLMGVFMMRWNLVIGGQAFSASFSGYMHYELPIIPHDIETFKEGLLGALLVGVLPFIF
FWGLNKIFPVFKCEDTH

Sequences:

>Translated_417_residues
MVHGEAWTLKELFVYPNEYIYWTIQIVMYPFMTGLVAGAFVLSSLYHVFGIKQLKDIARFSLVFSFALLPVAMIPLQLHL
QHPERGIEVMLTPHFTSAIAAFGIAFSTYGMIVASELWFVYRRHFVETALALREKRDKTIPERGRQLLFSALTLGAWDIS
EQALAKDERAVKIMATAGIPVACLLHGYAGFIFGSVKANALWTTPLMPFIFICSAVVSGIALCVLSYIVTMEVRKLMVAW
RRKSDPSLPTPDEIRTVEMYEVTMTAKYLVLALLAALGLELLDLLFRDYAKFSSWEIVRSLIYGKDFVNVFVIQYGIGNL
VPLALFLLPRLTVRRAVVATLLVLMGVFMMRWNLVIGGQAFSASFSGYMHYELPIIPHDIETFKEGLLGALLVGVLPFIF
FWGLNKIFPVFKCEDTH
>Mature_417_residues
MVHGEAWTLKELFVYPNEYIYWTIQIVMYPFMTGLVAGAFVLSSLYHVFGIKQLKDIARFSLVFSFALLPVAMIPLQLHL
QHPERGIEVMLTPHFTSAIAAFGIAFSTYGMIVASELWFVYRRHFVETALALREKRDKTIPERGRQLLFSALTLGAWDIS
EQALAKDERAVKIMATAGIPVACLLHGYAGFIFGSVKANALWTTPLMPFIFICSAVVSGIALCVLSYIVTMEVRKLMVAW
RRKSDPSLPTPDEIRTVEMYEVTMTAKYLVLALLAALGLELLDLLFRDYAKFSSWEIVRSLIYGKDFVNVFVIQYGIGNL
VPLALFLLPRLTVRRAVVATLLVLMGVFMMRWNLVIGGQAFSASFSGYMHYELPIIPHDIETFKEGLLGALLVGVLPFIF
FWGLNKIFPVFKCEDTH

Specific function: Probably Involved In The Transfer Of Electrons From The Quinone Pool To The Type-C Cytochromes. [C]

COG id: COG4881

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47050; Mature: 47050

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHGEAWTLKELFVYPNEYIYWTIQIVMYPFMTGLVAGAFVLSSLYHVFGIKQLKDIARF
CCCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLVFSFALLPVAMIPLQLHLQHPERGIEVMLTPHFTSAIAAFGIAFSTYGMIVASELWFV
HHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YRRHFVETALALREKRDKTIPERGRQLLFSALTLGAWDISEQALAKDERAVKIMATAGIP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCH
VACLLHGYAGFIFGSVKANALWTTPLMPFIFICSAVVSGIALCVLSYIVTMEVRKLMVAW
HHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRKSDPSLPTPDEIRTVEMYEVTMTAKYLVLALLAALGLELLDLLFRDYAKFSSWEIVRS
HCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LIYGKDFVNVFVIQYGIGNLVPLALFLLPRLTVRRAVVATLLVLMGVFMMRWNLVIGGQA
HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCH
FSASFSGYMHYELPIIPHDIETFKEGLLGALLVGVLPFIFFWGLNKIFPVFKCEDTH
HHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
>Mature Secondary Structure
MVHGEAWTLKELFVYPNEYIYWTIQIVMYPFMTGLVAGAFVLSSLYHVFGIKQLKDIARF
CCCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLVFSFALLPVAMIPLQLHLQHPERGIEVMLTPHFTSAIAAFGIAFSTYGMIVASELWFV
HHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YRRHFVETALALREKRDKTIPERGRQLLFSALTLGAWDISEQALAKDERAVKIMATAGIP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCH
VACLLHGYAGFIFGSVKANALWTTPLMPFIFICSAVVSGIALCVLSYIVTMEVRKLMVAW
HHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRKSDPSLPTPDEIRTVEMYEVTMTAKYLVLALLAALGLELLDLLFRDYAKFSSWEIVRS
HCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LIYGKDFVNVFVIQYGIGNLVPLALFLLPRLTVRRAVVATLLVLMGVFMMRWNLVIGGQA
HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCH
FSASFSGYMHYELPIIPHDIETFKEGLLGALLVGVLPFIFFWGLNKIFPVFKCEDTH
HHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA