Click here to switch to the map view.

The map label for this gene is 78221501

Identifier: 78221501

GI number: 78221501

Start: 309957

End: 310445

Strand: Direct

Name: 78221501

Synonym: Gmet_0278

Alternate gene names: NA

Gene position: 309957-310445 (Clockwise)

Preceding gene: 78221500

Following gene: 78221502

Centisome position: 7.75

GC content: 64.01

Gene sequence:

>489_bases
ATGTCGAAAGAAGCATCCGTAGCACCGAAGGAACGGGTCAATATCGTCTACCGTCCGGCCTCGGACGGCGCTGCCGAAGA
GGTTGAGCTGCCGCTGAAAATGCTCGTTATGGGGGACTTTACCGGCACCCCCGACGAACGCCCCGTCGAGAAGCGGGACC
CCGTCGCCATCGACAAGGAGACCTTCAACGACGTCATGAAGGCCCAGGGGATCTCCCTGAACATCGCCGTCCCCAACCGG
CTCGCCGGCGAGGCCGGGGACGAGCTGCCGGTGAACCTGAAGGTTGAGTCACTCAAGGACTTCGGCCCCGAGGCGGTGGT
GGAGCAGGTCCCCGAGATGAAGCGGCTCCTGGAGCTGCGGGAGGCCCTGCGGGCCCTCAAGGGGCCGCTTTCCAACGTTC
CCGACTTCCGGAGGAAGATCCAGGAACTGATCACCGACGACGCGGCCCGGGCCAAGCTTCTGGCTGAAATCGGCATCGAG
GAAGGGTAA

Upstream 100 bases:

>100_bases
TGCTCAAGGTCTTTGATGGATTTTCATAACCCTTACGCTGATTGCGTCCTCCACGGAGGGAGAAACAGTCACCGTTACGA
TCGTACGAAAGGAGAAGGAC

Downstream 100 bases:

>100_bases
GGAGGAGCAACCATGAGCGTAGAACAGCAAAACACCGCAGCAGTCGAGAGCCGGATAGAAGGATCGCTTCTGGAGGAGAT
TGTCCAGGCCACGAAGCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Protein ImpB; Cytoplasmic Protein; Type VI Secretion Protein VasQ; Conserved Protein; Type VI Secretion System Protein ImpB; Intracellular Growth Locus Subunit A; Type VI Secretion

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MSKEASVAPKERVNIVYRPASDGAAEEVELPLKMLVMGDFTGTPDERPVEKRDPVAIDKETFNDVMKAQGISLNIAVPNR
LAGEAGDELPVNLKVESLKDFGPEAVVEQVPEMKRLLELREALRALKGPLSNVPDFRRKIQELITDDAARAKLLAEIGIE
EG

Sequences:

>Translated_162_residues
MSKEASVAPKERVNIVYRPASDGAAEEVELPLKMLVMGDFTGTPDERPVEKRDPVAIDKETFNDVMKAQGISLNIAVPNR
LAGEAGDELPVNLKVESLKDFGPEAVVEQVPEMKRLLELREALRALKGPLSNVPDFRRKIQELITDDAARAKLLAEIGIE
EG
>Mature_161_residues
SKEASVAPKERVNIVYRPASDGAAEEVELPLKMLVMGDFTGTPDERPVEKRDPVAIDKETFNDVMKAQGISLNIAVPNRL
AGEAGDELPVNLKVESLKDFGPEAVVEQVPEMKRLLELREALRALKGPLSNVPDFRRKIQELITDDAARAKLLAEIGIEE
G

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17787; Mature: 17655

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEASVAPKERVNIVYRPASDGAAEEVELPLKMLVMGDFTGTPDERPVEKRDPVAIDKE
CCCCCCCCHHHHCEEEEECCCCCCHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCEECHH
TFNDVMKAQGISLNIAVPNRLAGEAGDELPVNLKVESLKDFGPEAVVEQVPEMKRLLELR
HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHH
EALRALKGPLSNVPDFRRKIQELITDDAARAKLLAEIGIEEG
HHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SKEASVAPKERVNIVYRPASDGAAEEVELPLKMLVMGDFTGTPDERPVEKRDPVAIDKE
CCCCCCCHHHHCEEEEECCCCCCHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCEECHH
TFNDVMKAQGISLNIAVPNRLAGEAGDELPVNLKVESLKDFGPEAVVEQVPEMKRLLELR
HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHH
EALRALKGPLSNVPDFRRKIQELITDDAARAKLLAEIGIEEG
HHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA