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The map label for this gene is 78221471

Identifier: 78221471

GI number: 78221471

Start: 278908

End: 279732

Strand: Direct

Name: 78221471

Synonym: Gmet_0248

Alternate gene names: NA

Gene position: 278908-279732 (Clockwise)

Preceding gene: 78221470

Following gene: 78221472

Centisome position: 6.98

GC content: 63.88

Gene sequence:

>825_bases
ATGCTGGTGGCGTTCGCACTTCTCCCCGCTCCTGCAACGGCCCACACGGAGGAGGATCTCCACAAGCACGGCCCCTTTGG
CACGGATGCCGGAGCGGGTGACGCGGCAAAGTTCGGCCTCACCGAACGACTGGGAGAGAAAATCCCCCTCGACCTCACGT
TTCGGGACGAGACCGGCGCGCCGGTCCGTCTGGCGGCTCTGGTGACCGTCCCCACCATCATCCTTCCCGTCTACTACAGT
TGCACCAACGTCTGCAATTTCCTCCAGGGGGGGCTCGCCAGCGTCCTGAAGGATGTCAGGCAGAGGCCGGGGGAGGAGTA
CCGGGTAATCTCGGTCAGTTTCGATGAAACCGAGACGCCGGAGCTGGCCACCAAGTACAAGCGGACGTATCTGGCATCCA
TGAACGCCCCCTTCCCGGAGAACGGGTGGCGGTTCCTGACCGGGGATGCGAAGAACATCCGTCGGCTGACCGATGCGGCC
GGCTTCCGGTTCGAGCGCCGGGGGAGGGATTTCATCCACCCGGTGGCGAGTATTATTGTCGCCCGGGACGGGACTATCGT
CCGGTACCTCTACGGGACGACTTTTCTCCCCAAGGACCTCTCCCTGGCGCTGCTGGAAGCCCGGAGCGGGAAGGTGGGGG
CGACGATCCGCCAGGTGGTGGGGTACTGCTTCACCTTCGACCCCCAGGCGAAGACCTACGTCTTCAACCTGCTGCGGGTG
AGCGCCACCATCGTCATCATAAGCACGGGGGCCTTTCTCGCCTTCCTGTTCCTGACCGGGAAAAAACGCCCCGCGTCTCC
CCGAGGTGGCCATGAAACCCACTGA

Upstream 100 bases:

>100_bases
CGGTAAGGTATAGGGACACACGATCTCGGTCACAGGGTGGTGGCCCATGGCATGGTTACACGGTCCACGATGGACCGCCT
TTCGATGCTTCCTCTCTATA

Downstream 100 bases:

>100_bases
CCAGACCATGACCCCCGCCGCCAGCTTCTGGAACGACACCGGCAGGAGCGGCATCGCCTCCTGGATCTTTTCCACCGACC
ACAAGCGGATCGGTCTCCTC

Product: hypothetical protein

Products: NA

Alternate protein names: SCO1/SenC Family Protein; SCO1/SenC/PrrC Family Protein; SenC/PrrC; Cytochrome C Oxidase Synthesis Factor; Respiratory System Biogenesis Protein; SenC/PrrC-Like

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MLVAFALLPAPATAHTEEDLHKHGPFGTDAGAGDAAKFGLTERLGEKIPLDLTFRDETGAPVRLAALVTVPTIILPVYYS
CTNVCNFLQGGLASVLKDVRQRPGEEYRVISVSFDETETPELATKYKRTYLASMNAPFPENGWRFLTGDAKNIRRLTDAA
GFRFERRGRDFIHPVASIIVARDGTIVRYLYGTTFLPKDLSLALLEARSGKVGATIRQVVGYCFTFDPQAKTYVFNLLRV
SATIVIISTGAFLAFLFLTGKKRPASPRGGHETH

Sequences:

>Translated_274_residues
MLVAFALLPAPATAHTEEDLHKHGPFGTDAGAGDAAKFGLTERLGEKIPLDLTFRDETGAPVRLAALVTVPTIILPVYYS
CTNVCNFLQGGLASVLKDVRQRPGEEYRVISVSFDETETPELATKYKRTYLASMNAPFPENGWRFLTGDAKNIRRLTDAA
GFRFERRGRDFIHPVASIIVARDGTIVRYLYGTTFLPKDLSLALLEARSGKVGATIRQVVGYCFTFDPQAKTYVFNLLRV
SATIVIISTGAFLAFLFLTGKKRPASPRGGHETH
>Mature_274_residues
MLVAFALLPAPATAHTEEDLHKHGPFGTDAGAGDAAKFGLTERLGEKIPLDLTFRDETGAPVRLAALVTVPTIILPVYYS
CTNVCNFLQGGLASVLKDVRQRPGEEYRVISVSFDETETPELATKYKRTYLASMNAPFPENGWRFLTGDAKNIRRLTDAA
GFRFERRGRDFIHPVASIIVARDGTIVRYLYGTTFLPKDLSLALLEARSGKVGATIRQVVGYCFTFDPQAKTYVFNLLRV
SATIVIISTGAFLAFLFLTGKKRPASPRGGHETH

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30085; Mature: 30085

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVAFALLPAPATAHTEEDLHKHGPFGTDAGAGDAAKFGLTERLGEKIPLDLTFRDETGA
CEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHCHHHHHCCCCCEEEEECCCCCC
PVRLAALVTVPTIILPVYYSCTNVCNFLQGGLASVLKDVRQRPGEEYRVISVSFDETETP
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCH
ELATKYKRTYLASMNAPFPENGWRFLTGDAKNIRRLTDAAGFRFERRGRDFIHPVASIIV
HHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHCCEEHHCCCHHHHHHHHHHH
ARDGTIVRYLYGTTFLPKDLSLALLEARSGKVGATIRQVVGYCFTFDPQAKTYVFNLLRV
CCCCCEEEEEECCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHEECCCCHHHHHHHHHHH
SATIVIISTGAFLAFLFLTGKKRPASPRGGHETH
HEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLVAFALLPAPATAHTEEDLHKHGPFGTDAGAGDAAKFGLTERLGEKIPLDLTFRDETGA
CEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHCHHHHHCCCCCEEEEECCCCCC
PVRLAALVTVPTIILPVYYSCTNVCNFLQGGLASVLKDVRQRPGEEYRVISVSFDETETP
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCH
ELATKYKRTYLASMNAPFPENGWRFLTGDAKNIRRLTDAAGFRFERRGRDFIHPVASIIV
HHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHCCEEHHCCCHHHHHHHHHHH
ARDGTIVRYLYGTTFLPKDLSLALLEARSGKVGATIRQVVGYCFTFDPQAKTYVFNLLRV
CCCCCEEEEEECCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHEECCCCHHHHHHHHHHH
SATIVIISTGAFLAFLFLTGKKRPASPRGGHETH
HEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA