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The map label for this gene is cspA [H]

Identifier: 78221460

GI number: 78221460

Start: 268351

End: 268551

Strand: Reverse

Name: cspA [H]

Synonym: Gmet_0237

Alternate gene names: 78221460

Gene position: 268551-268351 (Counterclockwise)

Preceding gene: 78221463

Following gene: 78221455

Centisome position: 6.72

GC content: 49.75

Gene sequence:

>201_bases
ATGGTAAACGGAACAGTAAAGTGGTTCAACGACAGCAAGGGTTTTGGATTTCTCGAGCAGGATAACGGTGAGGATGTGTT
CTGTCACTTCTCCGCCATCGCGGGTGACGGATTCAAATCCCTTACTGAAGGCGATAGGGTAACGTTTGAAGTAACCAAGG
GGCCGAAAGGTCTCCAGGCCGCGAACGTAACCAGAGTATAA

Upstream 100 bases:

>100_bases
TAATAGATTGACTTCATCAGAACAAAGCTGTTACTGTCGAAAAAACATCCGGCATGATGCCGGACAAAAACAACAGGAAG
TATCAGGAGAAAGTAAGCAC

Downstream 100 bases:

>100_bases
CAACCCTCCAGCAGACCTCAAAAGCCCCGGGAAAACCTCGGGGCTTTTTTGTTTCGGCAATTGCCGGCACCCCAAGGAAT
AGACACCTCGGGATCATGTC

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MVNGTVKWFNDSKGFGFLEQDNGEDVFCHFSAIAGDGFKSLTEGDRVTFEVTKGPKGLQAANVTRV

Sequences:

>Translated_66_residues
MVNGTVKWFNDSKGFGFLEQDNGEDVFCHFSAIAGDGFKSLTEGDRVTFEVTKGPKGLQAANVTRV
>Mature_66_residues
MVNGTVKWFNDSKGFGFLEQDNGEDVFCHFSAIAGDGFKSLTEGDRVTFEVTKGPKGLQAANVTRV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=61.9047619047619, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=57.5757575757576, Blast_Score=77, Evalue=1e-16,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=56.0606060606061, Blast_Score=75, Evalue=7e-16,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=49.2537313432836, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=53.968253968254, Blast_Score=69, Evalue=4e-14,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=50, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=46.969696969697, Blast_Score=65, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7172; Mature: 7172

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNGTVKWFNDSKGFGFLEQDNGEDVFCHFSAIAGDGFKSLTEGDRVTFEVTKGPKGLQA
CCCCEEEEEECCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCC
ANVTRV
CCEECC
>Mature Secondary Structure
MVNGTVKWFNDSKGFGFLEQDNGEDVFCHFSAIAGDGFKSLTEGDRVTFEVTKGPKGLQA
CCCCEEEEEECCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCC
ANVTRV
CCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA