Click here to switch to the map view.

The map label for this gene is recO [H]

Identifier: 78189922

GI number: 78189922

Start: 2501729

End: 2502580

Strand: Reverse

Name: recO [H]

Synonym: Cag_1969

Alternate gene names: 78189922

Gene position: 2502580-2501729 (Counterclockwise)

Preceding gene: 78189924

Following gene: 78189921

Centisome position: 97.3

GC content: 48.47

Gene sequence:

>852_bases
TTGTACAGGATCGAATCAAGAGGAGCCGTATATAATACTATTCAACAATATATAAAAGTTCACTCCGTGATTGTTAAAAC
GCGAGCGGTGGTGTTGCGCGAAACCAATTTTCGTGATCAATCACGCATTTGCTCCCTCTATAGCCGCGACTTTGGGCGCT
TATCCGTAATTATTAAAGGAGCACGCAATCCCAAGAATCGTTTGTGTGGACTTTTTAGTGCGGGCAATATTCTTGATGTG
GTAATCTACCGCAAAAGTGGGCGCGAGCTTCAGTTGGCAAGTGATGCTACCTTAGTGGCAAGTCCGCTTATGGCTGAGCC
TGATATGGAGCGTTTTGCGGCACTCTATCGCATTATTGATGTGGTTAAGCAAGCCACAGCCGAGCATGAGCATAATCCTC
AACTCTTTACCTTGCTTGCAGCAACATTGCAATCCCTATATCAGCAAGGCAGCAACAATCTCCTTTTAACCGCATGGTTT
TTGCTGCGCCTTGTCTCGTTACTTGGCTTTCAGCCATCGCTACGGCAGTGCGTTTTTAGTAATCACCAGCTTGCCACTGA
GGTGGTAGCTATGAAGCTATCGGAGTTGCTCTTTGTTATGAATCCGGGCGGTTTGGCGTTGCCAGCGGCTGGTGGCATTA
GTGTAGGTAAGCAGTGGCGCGTGCCTGTAGCGCTTGCCTTGCAAATAGCACCATTAGCCGAAGCCCGCACACCCGCTGAT
ATTTCTCTACAAGTGGAAGATGCTGAGCTGGAACTCCTTTGCGCGATTTTGTACGATTATTGTGCGATCCACCTTGAACA
CACGCCAAAGCGCCGCCATCTTGCCATTACCGCACAACTTGCCGAAGCGTAA

Upstream 100 bases:

>100_bases
GATATTGATAAGTAGGCATCGTAGGTATTCTCCTTAAAAAGTAGTTCAATAGAGTTAAAAAGTAGGAACAAATGTCGTTA
AGCACCTTTAATTCCCTCCA

Downstream 100 bases:

>100_bases
TGGAGGGGGGCTTTTATTGATTGAGCACCTCTAAGCAACTGCTAATGTTACAACGGTTTTATTATCTTCGGCAGTGTTCT
ATCTTCACCGCATAATTTTT

Product: recombination protein O, RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MYRIESRGAVYNTIQQYIKVHSVIVKTRAVVLRETNFRDQSRICSLYSRDFGRLSVIIKGARNPKNRLCGLFSAGNILDV
VIYRKSGRELQLASDATLVASPLMAEPDMERFAALYRIIDVVKQATAEHEHNPQLFTLLAATLQSLYQQGSNNLLLTAWF
LLRLVSLLGFQPSLRQCVFSNHQLATEVVAMKLSELLFVMNPGGLALPAAGGISVGKQWRVPVALALQIAPLAEARTPAD
ISLQVEDAELELLCAILYDYCAIHLEHTPKRRHLAITAQLAEA

Sequences:

>Translated_283_residues
MYRIESRGAVYNTIQQYIKVHSVIVKTRAVVLRETNFRDQSRICSLYSRDFGRLSVIIKGARNPKNRLCGLFSAGNILDV
VIYRKSGRELQLASDATLVASPLMAEPDMERFAALYRIIDVVKQATAEHEHNPQLFTLLAATLQSLYQQGSNNLLLTAWF
LLRLVSLLGFQPSLRQCVFSNHQLATEVVAMKLSELLFVMNPGGLALPAAGGISVGKQWRVPVALALQIAPLAEARTPAD
ISLQVEDAELELLCAILYDYCAIHLEHTPKRRHLAITAQLAEA
>Mature_283_residues
MYRIESRGAVYNTIQQYIKVHSVIVKTRAVVLRETNFRDQSRICSLYSRDFGRLSVIIKGARNPKNRLCGLFSAGNILDV
VIYRKSGRELQLASDATLVASPLMAEPDMERFAALYRIIDVVKQATAEHEHNPQLFTLLAATLQSLYQQGSNNLLLTAWF
LLRLVSLLGFQPSLRQCVFSNHQLATEVVAMKLSELLFVMNPGGLALPAAGGISVGKQWRVPVALALQIAPLAEARTPAD
ISLQVEDAELELLCAILYDYCAIHLEHTPKRRHLAITAQLAEA

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 31451; Mature: 31451

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRIESRGAVYNTIQQYIKVHSVIVKTRAVVLRETNFRDQSRICSLYSRDFGRLSVIIKG
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCEEEEEEEC
ARNPKNRLCGLFSAGNILDVVIYRKSGRELQLASDATLVASPLMAEPDMERFAALYRIID
CCCHHHHHEEHCCCCCEEEEEEECCCCCEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHH
VVKQATAEHEHNPQLFTLLAATLQSLYQQGSNNLLLTAWFLLRLVSLLGFQPSLRQCVFS
HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHC
NHQLATEVVAMKLSELLFVMNPGGLALPAAGGISVGKQWRVPVALALQIAPLAEARTPAD
CCHHHHHHHHHHHHHHEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEECHHHCCCCCCC
ISLQVEDAELELLCAILYDYCAIHLEHTPKRRHLAITAQLAEA
EEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MYRIESRGAVYNTIQQYIKVHSVIVKTRAVVLRETNFRDQSRICSLYSRDFGRLSVIIKG
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCEEEEEEEC
ARNPKNRLCGLFSAGNILDVVIYRKSGRELQLASDATLVASPLMAEPDMERFAALYRIID
CCCHHHHHEEHCCCCCEEEEEEECCCCCEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHH
VVKQATAEHEHNPQLFTLLAATLQSLYQQGSNNLLLTAWFLLRLVSLLGFQPSLRQCVFS
HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHC
NHQLATEVVAMKLSELLFVMNPGGLALPAAGGISVGKQWRVPVALALQIAPLAEARTPAD
CCHHHHHHHHHHHHHHEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEECHHHCCCCCCC
ISLQVEDAELELLCAILYDYCAIHLEHTPKRRHLAITAQLAEA
EEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA