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The map label for this gene is ybeQ [H]

Identifier: 78189891

GI number: 78189891

Start: 2469736

End: 2471013

Strand: Reverse

Name: ybeQ [H]

Synonym: Cag_1938

Alternate gene names: 78189891

Gene position: 2471013-2469736 (Counterclockwise)

Preceding gene: 78189892

Following gene: 78189890

Centisome position: 96.07

GC content: 42.02

Gene sequence:

>1278_bases
ATGAATGTTATGAAAAAATTTATCACAAGCATTGTTATAGCAAGTTTAACGCTGTTGGCGATTAATGGATTTTGTGAAAC
ACCCTCACAAAAACAAATATCTCAATGGCAACAAGCTGCTGCGCAAGGTAACTCAGAAGCACAATTAAATCTTGGTTATG
CCTATGATCATGGAGAAGGAGTGAAGCAAGATTATGCGGAGGCGATAAAATGGTATCGGTTGTCGGCAGCTCAAGGTGAT
GTTAAAGCACAATTTAATCTTGGGGTGATGTATTATAACGGTGAAGGAGTAAAGCAAGATTATGCAGAGGCGATAAAATG
GTTTCGTTTATTAGCAACTCAAGGTGATGCAATAGCACAATTTAATCTTGGGGTGATGTATTATAACGGTGAAGGCGTGA
AGCAAGATTATACAGATGCGTTGAAATGGTTTCAGTTATCAGCAGCTCAAGGAAATGCAATGGCACAAAACAATCTTGGT
GTGATGTATGCTAAAGGTGAAGGCGTGCAGCAAGATTATGCAGAAGCGTTGAAATGGCATCGTTTATCAGCAGCACAAGG
CAATGCAATGGCACAAAACAATCTTGGAGCGATGTATTATAAGGGTGAAGGAGTCGAGCAAGATTATGTGGAGGCACTAA
AATGGTATCGGTTATCGGCAGCACAAGGAGATGCGGTTGCGCAATGGATTCTCGGTTTGATGTACTATGAAGGTCAAGGA
GTAAGGCAAGATTACGGAGAAGCGATAAAATGGTATCGTTTATCAGCGGCTCAAGAAGATGCGAAAGCGCAATATAACCT
TGGCTTGATGTACTACAATGGTGAAGGTGTGAAGCAAGATTATGCCGAAGCGTTGAAATGGCATCGTTTATCAGCAGCAC
AAGGCAATGCAATGGCACAAAACAATCTTGGAGCGATGTATGCTAAAGGTGAGGGCGTGCAGCAAGATTATGCAGAAGCG
TTGAAATGGCATCGTTTATCAGCAGCTCAAGGTGATGCCACAGCACAAGGTATTCTCGGTTTGATGTACTGTGAAGGTTA
TGGAGTAAGGCAAAATTACGGAGAAGCGCTAAAATGGTATCGTTTATCGGCAGCTCAAGGAAATGCAGGTGCACAATACA
ATCTTGGTCTGATGTATTATAACGGTACAGGTGTTAGGCAGAGTAAAGCAATTGCAAAAGAGTGGTTTGGCAAAGCTTGT
GATAATGGTTTCCAAGATGGATGTGATGCATATCGGGAGTTAAATGAAGCTGGGGCAAAAACTAATAGGAGCCGGTAA

Upstream 100 bases:

>100_bases
CTTTTTTGTGCTACCGAGCGCGATTGTGTTGTGCTGGAAATTGTAGGGTTTGTAAAAAGTCGTTTTAGGTGATTTGTATG
CAATAGTTGCAATATCAAAC

Downstream 100 bases:

>100_bases
TGCAGCGAAAAGCATGGTTTGTTGTGTTGGTAAGTTTGCTGATAGGGTTATGTGCTAACAAAGGTTTCGCAGAATCACCA
ACACAACCATCCACATTAGT

Product: Sel1 repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MNVMKKFITSIVIASLTLLAINGFCETPSQKQISQWQQAAAQGNSEAQLNLGYAYDHGEGVKQDYAEAIKWYRLSAAQGD
VKAQFNLGVMYYNGEGVKQDYAEAIKWFRLLATQGDAIAQFNLGVMYYNGEGVKQDYTDALKWFQLSAAQGNAMAQNNLG
VMYAKGEGVQQDYAEALKWHRLSAAQGNAMAQNNLGAMYYKGEGVEQDYVEALKWYRLSAAQGDAVAQWILGLMYYEGQG
VRQDYGEAIKWYRLSAAQEDAKAQYNLGLMYYNGEGVKQDYAEALKWHRLSAAQGNAMAQNNLGAMYAKGEGVQQDYAEA
LKWHRLSAAQGDATAQGILGLMYCEGYGVRQNYGEALKWYRLSAAQGNAGAQYNLGLMYYNGTGVRQSKAIAKEWFGKAC
DNGFQDGCDAYRELNEAGAKTNRSR

Sequences:

>Translated_425_residues
MNVMKKFITSIVIASLTLLAINGFCETPSQKQISQWQQAAAQGNSEAQLNLGYAYDHGEGVKQDYAEAIKWYRLSAAQGD
VKAQFNLGVMYYNGEGVKQDYAEAIKWFRLLATQGDAIAQFNLGVMYYNGEGVKQDYTDALKWFQLSAAQGNAMAQNNLG
VMYAKGEGVQQDYAEALKWHRLSAAQGNAMAQNNLGAMYYKGEGVEQDYVEALKWYRLSAAQGDAVAQWILGLMYYEGQG
VRQDYGEAIKWYRLSAAQEDAKAQYNLGLMYYNGEGVKQDYAEALKWHRLSAAQGNAMAQNNLGAMYAKGEGVQQDYAEA
LKWHRLSAAQGDATAQGILGLMYCEGYGVRQNYGEALKWYRLSAAQGNAGAQYNLGLMYYNGTGVRQSKAIAKEWFGKAC
DNGFQDGCDAYRELNEAGAKTNRSR
>Mature_425_residues
MNVMKKFITSIVIASLTLLAINGFCETPSQKQISQWQQAAAQGNSEAQLNLGYAYDHGEGVKQDYAEAIKWYRLSAAQGD
VKAQFNLGVMYYNGEGVKQDYAEAIKWFRLLATQGDAIAQFNLGVMYYNGEGVKQDYTDALKWFQLSAAQGNAMAQNNLG
VMYAKGEGVQQDYAEALKWHRLSAAQGNAMAQNNLGAMYYKGEGVEQDYVEALKWYRLSAAQGDAVAQWILGLMYYEGQG
VRQDYGEAIKWYRLSAAQEDAKAQYNLGLMYYNGEGVKQDYAEALKWHRLSAAQGNAMAQNNLGAMYAKGEGVQQDYAEA
LKWHRLSAAQGDATAQGILGLMYCEGYGVRQNYGEALKWYRLSAAQGNAGAQYNLGLMYYNGTGVRQSKAIAKEWFGKAC
DNGFQDGCDAYRELNEAGAKTNRSR

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=347, Percent_Identity=34.5821325648415, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI151301150, Length=465, Percent_Identity=28.8172043010753, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI217330658, Length=192, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI217330656, Length=192, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI33620759, Length=230, Percent_Identity=32.1739130434783, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI87081769, Length=315, Percent_Identity=37.4603174603175, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI1786867, Length=128, Percent_Identity=41.40625, Blast_Score=87, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17563256, Length=438, Percent_Identity=29.2237442922374, Blast_Score=134, Evalue=8e-32,
Organism=Saccharomyces cerevisiae, GI6319410, Length=240, Percent_Identity=26.25, Blast_Score=70, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21355295, Length=355, Percent_Identity=30.4225352112676, Blast_Score=138, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 47103; Mature: 47103

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVMKKFITSIVIASLTLLAINGFCETPSQKQISQWQQAAAQGNSEAQLNLGYAYDHGEG
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC
VKQDYAEAIKWYRLSAAQGDVKAQFNLGVMYYNGEGVKQDYAEAIKWFRLLATQGDAIAQ
HHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
FNLGVMYYNGEGVKQDYTDALKWFQLSAAQGNAMAQNNLGVMYAKGEGVQQDYAEALKWH
EEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHH
RLSAAQGNAMAQNNLGAMYYKGEGVEQDYVEALKWYRLSAAQGDAVAQWILGLMYYEGQG
HHCCCCCCCCHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
VRQDYGEAIKWYRLSAAQEDAKAQYNLGLMYYNGEGVKQDYAEALKWHRLSAAQGNAMAQ
CHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEC
NNLGAMYAKGEGVQQDYAEALKWHRLSAAQGDATAQGILGLMYCEGYGVRQNYGEALKWY
CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHEEHEECCCCCHHHHHHHHHHH
RLSAAQGNAGAQYNLGLMYYNGTGVRQSKAIAKEWFGKACDNGFQDGCDAYRELNEAGAK
EEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
TNRSR
CCCCC
>Mature Secondary Structure
MNVMKKFITSIVIASLTLLAINGFCETPSQKQISQWQQAAAQGNSEAQLNLGYAYDHGEG
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC
VKQDYAEAIKWYRLSAAQGDVKAQFNLGVMYYNGEGVKQDYAEAIKWFRLLATQGDAIAQ
HHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
FNLGVMYYNGEGVKQDYTDALKWFQLSAAQGNAMAQNNLGVMYAKGEGVQQDYAEALKWH
EEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHH
RLSAAQGNAMAQNNLGAMYYKGEGVEQDYVEALKWYRLSAAQGDAVAQWILGLMYYEGQG
HHCCCCCCCCHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
VRQDYGEAIKWYRLSAAQEDAKAQYNLGLMYYNGEGVKQDYAEALKWHRLSAAQGNAMAQ
CHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEC
NNLGAMYAKGEGVQQDYAEALKWHRLSAAQGDATAQGILGLMYCEGYGVRQNYGEALKWY
CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHEEHEECCCCCHHHHHHHHHHH
RLSAAQGNAGAQYNLGLMYYNGTGVRQSKAIAKEWFGKACDNGFQDGCDAYRELNEAGAK
EEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
TNRSR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]