Click here to switch to the map view.

The map label for this gene is 78189767

Identifier: 78189767

GI number: 78189767

Start: 2332987

End: 2333313

Strand: Reverse

Name: 78189767

Synonym: Cag_1811

Alternate gene names: NA

Gene position: 2333313-2332987 (Counterclockwise)

Preceding gene: 78189768

Following gene: 78189764

Centisome position: 90.72

GC content: 39.14

Gene sequence:

>327_bases
ATGAAGAATAAGAGTAAAACATATCAAAGCGAAGCATTTGCAGCTATTCACGAAACTGCATCTGGGATGTATGATGTGGG
CGTTATTGATAAACAAACAATGCGTGAATTTGATGAAGTTTGTCTTACACCAATTCATCATGTTACTCCATCAGATATTA
AAGCTTTACGCGAACGAGAAGAAGTGAGTCAAAGTGTTTTTGCTCGTTACCTAAATGTGAGCAAAGATGTTGTAAGCCAA
TGGGAACGAGGAGCAAAAAAGCCGGCAGGTACAACTCTTAAGCTTTTAGCACTTGTTGAACGCAAGGGGATTCGAACAAT
CGCTTAA

Upstream 100 bases:

>100_bases
GTAAAAGGATTTAAAAAGTTAGCTAAAAACATTTTTGAACTGACTGATACGCAGCTTGAAAAACTCATTATATCGAAAGA
ATTTACACGGGTTCAATGCC

Downstream 100 bases:

>100_bases
AGTATTAAGGGCAGCTTATTTCCCCAAAGCAATAAAAATGCCCGCTTGCACTTCTCTGTAAGCGGGCATTGCTGTTTTTT
ATGGGTTCTTCATTTACCCC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; Transcriptional Regulator; Cro/CI Family Transcriptional Regulator-Related Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Transcriptional Regulator-Like Protein; Transcriptional Regulator-Like; Helix-Turn-Helix Family Protein; Helix-Turn-Helix Protein; Transcriptional Regulator Protein; HTH-Type Transcriptional Regulatory Protein

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MKNKSKTYQSEAFAAIHETASGMYDVGVIDKQTMREFDEVCLTPIHHVTPSDIKALREREEVSQSVFARYLNVSKDVVSQ
WERGAKKPAGTTLKLLALVERKGIRTIA

Sequences:

>Translated_108_residues
MKNKSKTYQSEAFAAIHETASGMYDVGVIDKQTMREFDEVCLTPIHHVTPSDIKALREREEVSQSVFARYLNVSKDVVSQ
WERGAKKPAGTTLKLLALVERKGIRTIA
>Mature_108_residues
MKNKSKTYQSEAFAAIHETASGMYDVGVIDKQTMREFDEVCLTPIHHVTPSDIKALREREEVSQSVFARYLNVSKDVVSQ
WERGAKKPAGTTLKLLALVERKGIRTIA

Specific function: Unknown

COG id: COG2944

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12152; Mature: 12152

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKSKTYQSEAFAAIHETASGMYDVGVIDKQTMREFDEVCLTPIHHVTPSDIKALRERE
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCHHCCCCHHHHHHHHHHH
EVSQSVFARYLNVSKDVVSQWERGAKKPAGTTLKLLALVERKGIRTIA
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKNKSKTYQSEAFAAIHETASGMYDVGVIDKQTMREFDEVCLTPIHHVTPSDIKALRERE
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCHHCCCCHHHHHHHHHHH
EVSQSVFARYLNVSKDVVSQWERGAKKPAGTTLKLLALVERKGIRTIA
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA