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The map label for this gene is ycbB [H]

Identifier: 78189746

GI number: 78189746

Start: 2311272

End: 2312963

Strand: Reverse

Name: ycbB [H]

Synonym: Cag_1790

Alternate gene names: 78189746

Gene position: 2312963-2311272 (Counterclockwise)

Preceding gene: 78189747

Following gene: 78189743

Centisome position: 89.93

GC content: 48.88

Gene sequence:

>1692_bases
ATGGCAATACTTACCCGTTCCATGGTGCTACAGCGTCAAGCATCGCCGTATCAGTTTCGTTTTGCGTTGATTCGATGTAT
TGCGGTATTGATGCTTTGTGCACCAATTTCTCTCTATGCGGCTGAGGAGGTGCAGCAAGCGGAATCAGCAGCGTGGAAGC
GCGATGTAGCATTGCGTCTTGAGAAATATTGTATTACAGTTTTTCGCTCGCCCGGTAGCGGTAAAACAAGAGAGAACAAC
TTGCGCGTTGCTCGCTTTTATGCCACTCGTAGTTACCAGCCACTTTGGAGTAGCACCACTATGACGCAAGAGCTTGCCAC
ATCACTTAATGCCGCATTTGAACATGGTTTAACGCCTGCCGAATACGATGTTGCGGGTGAACTTCCTCGTTGGATGGCGC
TTACCAACCGCTCTGCTGCCGCGCAAGCTCGTTACGATGTGCTTGCCACGCGTGCGTTTCTTACGCTTGCCACGCACTTA
CGCTACGGCAAACTCGACCCCGTGCGCTTTGAACCAACATGGAATTTTTCGTCGCCACCAAATCTCTTTCATTTTGATGA
ACTGTTAGCACGCACCTTGCAGCGCACCTCTCCAAGTGAAGTGCTCAATGGCTTGCTCCCGCGTGATCCGGGGTATGATG
TATTGAAAAAAGAGCTGGCACGTTACCGAGAAATAGCAAAAAATGGGGGATGGTCCGCCATTCCTGCGGGAACGCTTTTG
CAGGAAGGAAGCCGTGATGCTCGTGTGCCGCTATTGCGCCAACGCCTTGCTGCTTCGGGCGATATAAGCTCAAGTGCGGT
AGCTGATACCACAACCCTATACAACCCTGATGTAACAAAAGCCGTAAAGCGCTTTCAGCAACAGCATGGTTTATGGAGTG
ATGGAGTTGTTGGTGCTACCACCTTACGCGCCATCAATGTAAGTGCAGATGAACGAATTGGGCAATTGCGGGTTAATTTG
GAGCGTTGCCGCTGGCTTTTGCATGATATTTCACCAACCTCCGTAATTGTTAACATTCCAGCATACACGTTGCACTATTT
TGAGCAAGGCGATCGCCGCTGGAGTACTCGCGTCATTGTGGGGCAGCCCAAACGACCTACACCGGTGTTTCGTGCCGATA
TGCAATTGCTTATTCTTAACCCCCGCTGGGTAGTGCCCTCAACCGTTTTGGCAAAGGATGTGCTGCCCGCAGTTATCAAA
GATCCTGCATATCTCCGCAAAAAAAAATTACGAGTTGTTGATGAAAATGGTACCATTATTGATCCAGCAACCATTAAATG
GTCAAGCTATTCAGCCAGCACCTTACCATACCGTTTACAGCAAAAATCGGGGGATGATGGGGCGCTTGGACGCATTAAAT
TCCTTATGCCCAACCGCTACACCATCTATTTGCACGACACTCCCGATAAAGCCTTGTTCCAAAAAACACAACGCGCTTTT
AGCTCAGGCTGTATTCGTGTGCAACACCCCGAAGAACTTGCTCGTCTTGTGCTTCGCCATAGCAATCGAGAAAGTCGTCC
CTCTCTTGAAAGCCGCATTAAAAGTGGTGCAACATCAACCATTCGCCTTCCGCAACAAATTCCCGTCTATTTAATTTACC
TGACGGCACTACCCTGCAACAACAAAGCTGAATTTCGAGAAGATATTTATCATCGCGATCCTCAAATTCTTAAAGCGTTA
GACGCGAAGTAG

Upstream 100 bases:

>100_bases
AGCACCAAAAGCGGAAACCACAATGGTGGCAGCAGAGCAAGAAGTTGAAGTTACCGTGCATTCTCGTTGGCAAATTCGTC
CTCTTGTAGGTTCCAAATAA

Downstream 100 bases:

>100_bases
GAGAACTCTTTTGGTTATATAGTGTTGCATTAAACGAGCTTCCCTTACAAAACCACAAACGCCCAACTCCACAAGGTAGA
GCTGGGCGTTAAAATTATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 562

Protein sequence:

>563_residues
MAILTRSMVLQRQASPYQFRFALIRCIAVLMLCAPISLYAAEEVQQAESAAWKRDVALRLEKYCITVFRSPGSGKTRENN
LRVARFYATRSYQPLWSSTTMTQELATSLNAAFEHGLTPAEYDVAGELPRWMALTNRSAAAQARYDVLATRAFLTLATHL
RYGKLDPVRFEPTWNFSSPPNLFHFDELLARTLQRTSPSEVLNGLLPRDPGYDVLKKELARYREIAKNGGWSAIPAGTLL
QEGSRDARVPLLRQRLAASGDISSSAVADTTTLYNPDVTKAVKRFQQQHGLWSDGVVGATTLRAINVSADERIGQLRVNL
ERCRWLLHDISPTSVIVNIPAYTLHYFEQGDRRWSTRVIVGQPKRPTPVFRADMQLLILNPRWVVPSTVLAKDVLPAVIK
DPAYLRKKKLRVVDENGTIIDPATIKWSSYSASTLPYRLQQKSGDDGALGRIKFLMPNRYTIYLHDTPDKALFQKTQRAF
SSGCIRVQHPEELARLVLRHSNRESRPSLESRIKSGATSTIRLPQQIPVYLIYLTALPCNNKAEFREDIYHRDPQILKAL
DAK

Sequences:

>Translated_563_residues
MAILTRSMVLQRQASPYQFRFALIRCIAVLMLCAPISLYAAEEVQQAESAAWKRDVALRLEKYCITVFRSPGSGKTRENN
LRVARFYATRSYQPLWSSTTMTQELATSLNAAFEHGLTPAEYDVAGELPRWMALTNRSAAAQARYDVLATRAFLTLATHL
RYGKLDPVRFEPTWNFSSPPNLFHFDELLARTLQRTSPSEVLNGLLPRDPGYDVLKKELARYREIAKNGGWSAIPAGTLL
QEGSRDARVPLLRQRLAASGDISSSAVADTTTLYNPDVTKAVKRFQQQHGLWSDGVVGATTLRAINVSADERIGQLRVNL
ERCRWLLHDISPTSVIVNIPAYTLHYFEQGDRRWSTRVIVGQPKRPTPVFRADMQLLILNPRWVVPSTVLAKDVLPAVIK
DPAYLRKKKLRVVDENGTIIDPATIKWSSYSASTLPYRLQQKSGDDGALGRIKFLMPNRYTIYLHDTPDKALFQKTQRAF
SSGCIRVQHPEELARLVLRHSNRESRPSLESRIKSGATSTIRLPQQIPVYLIYLTALPCNNKAEFREDIYHRDPQILKAL
DAK
>Mature_562_residues
AILTRSMVLQRQASPYQFRFALIRCIAVLMLCAPISLYAAEEVQQAESAAWKRDVALRLEKYCITVFRSPGSGKTRENNL
RVARFYATRSYQPLWSSTTMTQELATSLNAAFEHGLTPAEYDVAGELPRWMALTNRSAAAQARYDVLATRAFLTLATHLR
YGKLDPVRFEPTWNFSSPPNLFHFDELLARTLQRTSPSEVLNGLLPRDPGYDVLKKELARYREIAKNGGWSAIPAGTLLQ
EGSRDARVPLLRQRLAASGDISSSAVADTTTLYNPDVTKAVKRFQQQHGLWSDGVVGATTLRAINVSADERIGQLRVNLE
RCRWLLHDISPTSVIVNIPAYTLHYFEQGDRRWSTRVIVGQPKRPTPVFRADMQLLILNPRWVVPSTVLAKDVLPAVIKD
PAYLRKKKLRVVDENGTIIDPATIKWSSYSASTLPYRLQQKSGDDGALGRIKFLMPNRYTIYLHDTPDKALFQKTQRAFS
SGCIRVQHPEELARLVLRHSNRESRPSLESRIKSGATSTIRLPQQIPVYLIYLTALPCNNKAEFREDIYHRDPQILKALD
AK

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=519, Percent_Identity=31.5992292870906, Blast_Score=230, Evalue=1e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 63660; Mature: 63529

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILTRSMVLQRQASPYQFRFALIRCIAVLMLCAPISLYAAEEVQQAESAAWKRDVALRL
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
EKYCITVFRSPGSGKTRENNLRVARFYATRSYQPLWSSTTMTQELATSLNAAFEHGLTPA
HHHEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
EYDVAGELPRWMALTNRSAAAQARYDVLATRAFLTLATHLRYGKLDPVRFEPTWNFSSPP
CCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCC
NLFHFDELLARTLQRTSPSEVLNGLLPRDPGYDVLKKELARYREIAKNGGWSAIPAGTLL
CCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
QEGSRDARVPLLRQRLAASGDISSSAVADTTTLYNPDVTKAVKRFQQQHGLWSDGVVGAT
HCCCCCCCCHHHHHHHHCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCE
TLRAINVSADERIGQLRVNLERCRWLLHDISPTSVIVNIPAYTLHYFEQGDRRWSTRVIV
EEEEEECCHHHHHHHHEEEHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCEEEEEEE
GQPKRPTPVFRADMQLLILNPRWVVPSTVLAKDVLPAVIKDPAYLRKKKLRVVDENGTII
ECCCCCCCHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCEEECCCCCEE
DPATIKWSSYSASTLPYRLQQKSGDDGALGRIKFLMPNRYTIYLHDTPDKALFQKTQRAF
CCCEEEECCCCCCCCCCHHHCCCCCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHH
SSGCIRVQHPEELARLVLRHSNRESRPSLESRIKSGATSTIRLPQQIPVYLIYLTALPCN
HHCCEEEECHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEECCCCCCEEEEEEEECCCC
NKAEFREDIYHRDPQILKALDAK
CHHHHHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure 
AILTRSMVLQRQASPYQFRFALIRCIAVLMLCAPISLYAAEEVQQAESAAWKRDVALRL
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
EKYCITVFRSPGSGKTRENNLRVARFYATRSYQPLWSSTTMTQELATSLNAAFEHGLTPA
HHHEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
EYDVAGELPRWMALTNRSAAAQARYDVLATRAFLTLATHLRYGKLDPVRFEPTWNFSSPP
CCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCC
NLFHFDELLARTLQRTSPSEVLNGLLPRDPGYDVLKKELARYREIAKNGGWSAIPAGTLL
CCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
QEGSRDARVPLLRQRLAASGDISSSAVADTTTLYNPDVTKAVKRFQQQHGLWSDGVVGAT
HCCCCCCCCHHHHHHHHCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCE
TLRAINVSADERIGQLRVNLERCRWLLHDISPTSVIVNIPAYTLHYFEQGDRRWSTRVIV
EEEEEECCHHHHHHHHEEEHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCEEEEEEE
GQPKRPTPVFRADMQLLILNPRWVVPSTVLAKDVLPAVIKDPAYLRKKKLRVVDENGTII
ECCCCCCCHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCEEECCCCCEE
DPATIKWSSYSASTLPYRLQQKSGDDGALGRIKFLMPNRYTIYLHDTPDKALFQKTQRAF
CCCEEEECCCCCCCCCCHHHCCCCCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHH
SSGCIRVQHPEELARLVLRHSNRESRPSLESRIKSGATSTIRLPQQIPVYLIYLTALPCN
HHCCEEEECHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEECCCCCCEEEEEEEECCCC
NKAEFREDIYHRDPQILKALDAK
CHHHHHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]