Click here to switch to the map view.

The map label for this gene is dnaX [H]

Identifier: 78189734

GI number: 78189734

Start: 2295628

End: 2296803

Strand: Reverse

Name: dnaX [H]

Synonym: Cag_1778

Alternate gene names: 78189734

Gene position: 2296803-2295628 (Counterclockwise)

Preceding gene: 78189735

Following gene: 78189733

Centisome position: 89.3

GC content: 49.15

Gene sequence:

>1176_bases
ATGAGCTGGAGCTCCATTATTGGGCAGCAGCAGCAACTTCGAGTGCTGCAACATGCGCTTGAAACCGGGCGCTTTGCTCA
TGCCTACCTTTTTATGGGTGCCGAAGGGTGTGGCAAAGAGGCGGTTGCTTTTGAAATTGCGGCACTGCTTAACTGCCGCA
ACGCATCAGCTTCACCGCAAGTTGGGGCGTGCAACACCTGCCCCGATTGCGAAAAAGTACACGCCCTTAACCATCCCAAC
GTTGAGTACATTTTTCCCGTTGAAGCCGTCTTGCTTGAAGGTGGAGGAGATTTGGCGAAAAAAGAGAATAAGCGTTTTAC
GGAGGCTAAAGAGCGTTACGATGCCCTCATTGAACGCAAAAAAGAAAATCCCTACTTTGCCCCAGCTATGGAACGCTCCA
TGGGCATTTTAACCGAGCAAATTTTAAGCTTGCAGCAAAAAGCGCTCTTTATGCCAAGTGTGGGGAGCAAAAAAATCTTC
ATTATTTCGCAAGCCGAGCGCTTGCACCCTTCAGCCGCAAATAAGCTCTTAAAACTGCTTGAGGAGCCGCCTGAGCATGT
GCTTTTTATTCTTATTTCATCACGCCCCGAAGCACTTTTGCCCACCATTCGCTCTCGCTGCCAAGCAGTAAAATTTTCGC
GCATTACCACCATGCAGTTGCGTGAGTGGCTTGCACAACATCGCCCCGACATTGTAGAGCCTGAACGGAGCTTTGTGGTC
AATTTTTCGCGCGGCAATCTTCGCCTTGCGTGGGATTTGCTCAGTAACCGCTCTTCGGATATGGCGGAGGCACCCGCTTT
GCAATTACGCAATCAAGCGCTCGACTATTTGCGCTATGTGCTAACGCCCAACCGCTTTCACGAAGCAATTGTTGCTTGTG
AACAGTATGCTAAAAGTTTATCGCGTCGTGAGTTAACGCTCTTTTTAGCGGCGTTGTTGCTCTTTTTTCAAGATGCTTGC
CATCGTCGCATTAACCCATCGGTTGCCGACCTCAACAATCCCGATTTAAGCGACAATGTGAATCGTTTTGCAAAGAACTT
CCCCAACACCAACTATTTTGCTCTTTCACAAGCAATTGAAGATGCTATTAGCTCACTTGAGCGCAATGTGGCACCGTTGC
TTGTTATGGCAACGCTTACCACCGAGCTTCGCCAACAGCTTCAGCGACGGGGATAA

Upstream 100 bases:

>100_bases
AAGATCTATACTTAGAAAAGAGGAGCAGGGAATTTATACCTGCCCTCTTTTTGTTTAGAGATGTTCGTTCGACAACTATC
ACCATGCCACCATTTACGTT

Downstream 100 bases:

>100_bases
AAATATAGGAACCAAATAAGTTCAATCTCTTTTCATATCGTTGTGAACAAGGACAAGCAAACACATTGTTAATTATAAAT
GGCATCTCTAAATGTAATAA

Product: DNA polymerase III subunit delta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MSWSSIIGQQQQLRVLQHALETGRFAHAYLFMGAEGCGKEAVAFEIAALLNCRNASASPQVGACNTCPDCEKVHALNHPN
VEYIFPVEAVLLEGGGDLAKKENKRFTEAKERYDALIERKKENPYFAPAMERSMGILTEQILSLQQKALFMPSVGSKKIF
IISQAERLHPSAANKLLKLLEEPPEHVLFILISSRPEALLPTIRSRCQAVKFSRITTMQLREWLAQHRPDIVEPERSFVV
NFSRGNLRLAWDLLSNRSSDMAEAPALQLRNQALDYLRYVLTPNRFHEAIVACEQYAKSLSRRELTLFLAALLLFFQDAC
HRRINPSVADLNNPDLSDNVNRFAKNFPNTNYFALSQAIEDAISSLERNVAPLLVMATLTTELRQQLQRRG

Sequences:

>Translated_391_residues
MSWSSIIGQQQQLRVLQHALETGRFAHAYLFMGAEGCGKEAVAFEIAALLNCRNASASPQVGACNTCPDCEKVHALNHPN
VEYIFPVEAVLLEGGGDLAKKENKRFTEAKERYDALIERKKENPYFAPAMERSMGILTEQILSLQQKALFMPSVGSKKIF
IISQAERLHPSAANKLLKLLEEPPEHVLFILISSRPEALLPTIRSRCQAVKFSRITTMQLREWLAQHRPDIVEPERSFVV
NFSRGNLRLAWDLLSNRSSDMAEAPALQLRNQALDYLRYVLTPNRFHEAIVACEQYAKSLSRRELTLFLAALLLFFQDAC
HRRINPSVADLNNPDLSDNVNRFAKNFPNTNYFALSQAIEDAISSLERNVAPLLVMATLTTELRQQLQRRG
>Mature_390_residues
SWSSIIGQQQQLRVLQHALETGRFAHAYLFMGAEGCGKEAVAFEIAALLNCRNASASPQVGACNTCPDCEKVHALNHPNV
EYIFPVEAVLLEGGGDLAKKENKRFTEAKERYDALIERKKENPYFAPAMERSMGILTEQILSLQQKALFMPSVGSKKIFI
ISQAERLHPSAANKLLKLLEEPPEHVLFILISSRPEALLPTIRSRCQAVKFSRITTMQLREWLAQHRPDIVEPERSFVVN
FSRGNLRLAWDLLSNRSSDMAEAPALQLRNQALDYLRYVLTPNRFHEAIVACEQYAKSLSRRELTLFLAALLLFFQDACH
RRINPSVADLNNPDLSDNVNRFAKNFPNTNYFALSQAIEDAISSLERNVAPLLVMATLTTELRQQLQRRG

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria [H]

COG id: COG2812

COG function: function code L; DNA polymerase III, gamma/tau subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR001270
- InterPro:   IPR008921
- InterPro:   IPR022754
- InterPro:   IPR012763 [H]

Pfam domain/function: PF00004 AAA; PF12169 DNA_pol3_gamma3 [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 44190; Mature: 44059

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWSSIIGQQQQLRVLQHALETGRFAHAYLFMGAEGCGKEAVAFEIAALLNCRNASASPQ
CCCHHHHCCHHHHHHHHHHHHHCCCEEHHEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
VGACNTCPDCEKVHALNHPNVEYIFPVEAVLLEGGGDLAKKENKRFTEAKERYDALIERK
CCCCCCCCCHHHHHCCCCCCCEEEECHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
KENPYFAPAMERSMGILTEQILSLQQKALFMPSVGSKKIFIISQAERLHPSAANKLLKLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHCCHHHHHHHHHHH
EEPPEHVLFILISSRPEALLPTIRSRCQAVKFSRITTMQLREWLAQHRPDIVEPERSFVV
HCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
NFSRGNLRLAWDLLSNRSSDMAEAPALQLRNQALDYLRYVLTPNRFHEAIVACEQYAKSL
EECCCCEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
SRRELTLFLAALLLFFQDACHRRINPSVADLNNPDLSDNVNRFAKNFPNTNYFALSQAIE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
DAISSLERNVAPLLVMATLTTELRQQLQRRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SWSSIIGQQQQLRVLQHALETGRFAHAYLFMGAEGCGKEAVAFEIAALLNCRNASASPQ
CCHHHHCCHHHHHHHHHHHHHCCCEEHHEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
VGACNTCPDCEKVHALNHPNVEYIFPVEAVLLEGGGDLAKKENKRFTEAKERYDALIERK
CCCCCCCCCHHHHHCCCCCCCEEEECHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
KENPYFAPAMERSMGILTEQILSLQQKALFMPSVGSKKIFIISQAERLHPSAANKLLKLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHCCHHHHHHHHHHH
EEPPEHVLFILISSRPEALLPTIRSRCQAVKFSRITTMQLREWLAQHRPDIVEPERSFVV
HCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
NFSRGNLRLAWDLLSNRSSDMAEAPALQLRNQALDYLRYVLTPNRFHEAIVACEQYAKSL
EECCCCEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
SRRELTLFLAALLLFFQDACHRRINPSVADLNNPDLSDNVNRFAKNFPNTNYFALSQAIE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
DAISSLERNVAPLLVMATLTTELRQQLQRRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2124672; 7584024; 9384377; 2452406; 2468993; 1698458 [H]