Click here to switch to the map view.

The map label for this gene is omp16 [H]

Identifier: 78189654

GI number: 78189654

Start: 2205726

End: 2206361

Strand: Reverse

Name: omp16 [H]

Synonym: Cag_1698

Alternate gene names: 78189654

Gene position: 2206361-2205726 (Counterclockwise)

Preceding gene: 78189655

Following gene: 78189653

Centisome position: 85.78

GC content: 48.43

Gene sequence:

>636_bases
ATGTTCTTTTGTGTTAACTATAAACCTACTTCACTTATGAAAAAATCTGTTAGCCCTTTTGTACGCTCAGTAATGGTGCC
TGGCATGTTGTTGATGGGTGCTTGCACCTGCCAACCCGTTGCACTTGAGCCTGCGCTTCAACCCGCACCTGCTCCAGCTC
CTGTAGTGGTACCACCTCCGCCACCACCAGCCCCACCAGCCCCAAAACCTGCACCAGCGCCCGCACCTGTGGTTGTTGCG
CCACCACCACCCGTTGTGGTTGCTCCTCCACCTCCACCGCCCGCACCTATTGTGGTAACAAAGGCGATGATTTTAGGCGA
TATCTTGTTTGACTTCGATAAATCATTTATTCGTAAAGATGCGGTACCTCAGCTTCAGGATGTTGCTGCATGGATGAAAG
AGCATCCAACCAAAAACGTTACTATTGAAGCCCACTGCGACTCAAAAGGCTCAGAAGCATACAACATTGCTCTTGGTAAG
CGCCGTGCTGATGCTGCAAAAGCTTATTTGGTTAATAAAGGCATTGATAGCAATCGCTTAAAAACCATTAGCTATGGTAA
GGATAAGCCACTGATGAATGGTATTGATGAATCGGCTCGTGCTCGTAACCGTCGTGTTCACTTTGTGGTAGAGTAG

Upstream 100 bases:

>100_bases
AAAAATTGATAGCCTGCTAAAAAATTCGTTACTTTAAAAAAGATTGCTTTTAAAACTTCTTTTCATTTCTCGGCACTACA
TGTAACGTGGAGTGTCGAGA

Downstream 100 bases:

>100_bases
GTTGGTTTCATGCGTCAATACGTTTGATAATTGCAAGCAAACGCCCAATAAAAAAGCTCCTCAACAGTAACATGCTGAGG
AGCTTTTTTGTTTCAGTCGA

Product: peptidoglycan-associated (lipo)protein-like protein

Products: NA

Alternate protein names: 16.5 kDa minor OMP; 16 kDa OMP; Minor outer membrane protein omp16 [H]

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MFFCVNYKPTSLMKKSVSPFVRSVMVPGMLLMGACTCQPVALEPALQPAPAPAPVVVPPPPPPAPPAPKPAPAPAPVVVA
PPPPVVVAPPPPPPAPIVVTKAMILGDILFDFDKSFIRKDAVPQLQDVAAWMKEHPTKNVTIEAHCDSKGSEAYNIALGK
RRADAAKAYLVNKGIDSNRLKTISYGKDKPLMNGIDESARARNRRVHFVVE

Sequences:

>Translated_211_residues
MFFCVNYKPTSLMKKSVSPFVRSVMVPGMLLMGACTCQPVALEPALQPAPAPAPVVVPPPPPPAPPAPKPAPAPAPVVVA
PPPPVVVAPPPPPPAPIVVTKAMILGDILFDFDKSFIRKDAVPQLQDVAAWMKEHPTKNVTIEAHCDSKGSEAYNIALGK
RRADAAKAYLVNKGIDSNRLKTISYGKDKPLMNGIDESARARNRRVHFVVE
>Mature_211_residues
MFFCVNYKPTSLMKKSVSPFVRSVMVPGMLLMGACTCQPVALEPALQPAPAPAPVVVPPPPPPAPPAPKPAPAPAPVVVA
PPPPVVVAPPPPPPAPIVVTKAMILGDILFDFDKSFIRKDAVPQLQDVAAWMKEHPTKNVTIEAHCDSKGSEAYNIALGK
RRADAAKAYLVNKGIDSNRLKTISYGKDKPLMNGIDESARARNRRVHFVVE

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=102, Percent_Identity=43.1372549019608, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22559; Mature: 22559

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFCVNYKPTSLMKKSVSPFVRSVMVPGMLLMGACTCQPVALEPALQPAPAPAPVVVPPP
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEECCC
PPPAPPAPKPAPAPAPVVVAPPPPVVVAPPPPPPAPIVVTKAMILGDILFDFDKSFIRKD
CCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
AVPQLQDVAAWMKEHPTKNVTIEAHCDSKGSEAYNIALGKRRADAAKAYLVNKGIDSNRL
CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHEECCCCCCCE
KTISYGKDKPLMNGIDESARARNRRVHFVVE
EEEECCCCCCHHCCCCHHHHHCCCEEEEEEC
>Mature Secondary Structure
MFFCVNYKPTSLMKKSVSPFVRSVMVPGMLLMGACTCQPVALEPALQPAPAPAPVVVPPP
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEECCC
PPPAPPAPKPAPAPAPVVVAPPPPVVVAPPPPPPAPIVVTKAMILGDILFDFDKSFIRKD
CCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
AVPQLQDVAAWMKEHPTKNVTIEAHCDSKGSEAYNIALGKRRADAAKAYLVNKGIDSNRL
CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHEECCCCCCCE
KTISYGKDKPLMNGIDESARARNRRVHFVVE
EEEECCCCCCHHCCCCHHHHHCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8063379; 10456959 [H]