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The map label for this gene is 78189535

Identifier: 78189535

GI number: 78189535

Start: 2058740

End: 2060002

Strand: Reverse

Name: 78189535

Synonym: Cag_1575

Alternate gene names: NA

Gene position: 2060002-2058740 (Counterclockwise)

Preceding gene: 78189541

Following gene: 78189534

Centisome position: 80.09

GC content: 50.91

Gene sequence:

>1263_bases
ATGGATACTCTTACGAAATTGCGCATTCTTTCGGGCGCGGCTCGTTACGATGCTTCGTGTGCGTCGAGTGGGAGCAATCG
TAGTGGCGCTTCGTGCGGTATTGGTAATACGTCGCAAAGTGGTATTTGCCATTCGTGGTCGGATGATGGGCGCTGTATTT
CTCTCTTAAAAATTCTCCTCTCAAACGATTGTTGCTACAATTGCGCTTATTGCGTGAATCGTGCCACCAATCCCGTTGAG
CGTGCCTCGTTTACGGCGCGTGAAGTGGTTGACTTAACGCTTGACTTTTACCGCCGTAACTATATTGAGGGATTGTTTTT
AAGTTCGGCGGTTATGCAAAGCCCCGATGCCACTATGGAGCGTATGGTGGCTGTGGCTGAAACGTTGCGGAGCGAGGAGC
GTTTTGGCGGTTACATTCACCTGAAAATTATTCCGGGTGCCAGCAGCGAGTTGGTGCGTAAAGCGGGGCTTTATGCTGAC
CGCATTAGTGTGAATATTGAGCTGCCGTCGCAAGTGTCGTTAGAACGTTTGGCGCCGCAAAAGCATCGGGCGGCAATTTT
AGAGCCGATGGCGCTCATTGGGCGCGAAATTAACACAAGCCTTGTGGAGCGTCAGCATAGTCATCGGGCACCTCGTTTTG
CGCCAGCAGGGCAGAGCACGCAAATGATTATTGGTGCTACGCCCGAAAGCGATTTTCAAATTTTGCGCCTTTCGCAAGGG
TTGTATAAAAAAATGAACCTCAAGCGGGTCTATTACTCGGCTTACGTGCCCGTTAGTGAGGATAACCGTTTGCCCGTGCT
TGCAGCGCCACCGCTTTTGCGCGAACATCGGTTGTATCAAGCCGATTGGTTGCTGCGCTTTTATGGCTTTTCGGCTGAAG
AAATTTTATCGGAGGAGTTGCCACATCTCGATGAGCAATTCGATCCTAAAACAGCGTGGGCGTTGCGTCATCCCGAATTT
TTTCCCGTTGATATTAATCGTGCCGATTACGCCACGCTCTTGCGGGTGCCGGGCATTGGCGTTACTTCCGCTAAACGCAT
TGTTGCTGCTCGCCGCTTTTCGCTTATAACGTTTGAAGGATTGAAAAAAATTGGGGTGGTAATAAAGCGGGCGCGTTACT
TTATTACCATGCAAGGGCGCCGTGTTGAGTGCACCGACTTTTCGCCAACGCTCATTCGTCGTCAGCTCCTTTTAAGCGAA
TCCACAGAAAAGCCCGCTTCACGGCAGCTTGTGCTCCCAGGACTTGAACCCATCCTCGCATGA

Upstream 100 bases:

>100_bases
GTGGGTTCGAATCCCGCTACGCCGACTCTTTTATGCAGCTTATTTTTATCCCCACAAAGCTGATAGATCCAATTGCTTCT
TCTCTCTCCCTTCTCTTGCC

Downstream 100 bases:

>100_bases
ATCGTTACTTGTATGATGGAACGGCTGATGGCTTGCTTTCGGCTATTAGTTGGATTTTAGAGGAGGAGCAAGAGCCTGAG
CAGGTTGTGCTTGCAGAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Radical SAM Family Protein; Elongator /MiaB/NifB; Radical Sam Domain Protein; Radical SAM; Radical SAM Superfamily Protein; Biotin Synthase Related Domain-Containing Protein; Biotin Synthase Related Domain Containing Protein; Elongator Protein; Radical SAM Methylase Protein; Helix-Hairpin-Helix Motif; Radical SAM Protein

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MDTLTKLRILSGAARYDASCASSGSNRSGASCGIGNTSQSGICHSWSDDGRCISLLKILLSNDCCYNCAYCVNRATNPVE
RASFTAREVVDLTLDFYRRNYIEGLFLSSAVMQSPDATMERMVAVAETLRSEERFGGYIHLKIIPGASSELVRKAGLYAD
RISVNIELPSQVSLERLAPQKHRAAILEPMALIGREINTSLVERQHSHRAPRFAPAGQSTQMIIGATPESDFQILRLSQG
LYKKMNLKRVYYSAYVPVSEDNRLPVLAAPPLLREHRLYQADWLLRFYGFSAEEILSEELPHLDEQFDPKTAWALRHPEF
FPVDINRADYATLLRVPGIGVTSAKRIVAARRFSLITFEGLKKIGVVIKRARYFITMQGRRVECTDFSPTLIRRQLLLSE
STEKPASRQLVLPGLEPILA

Sequences:

>Translated_420_residues
MDTLTKLRILSGAARYDASCASSGSNRSGASCGIGNTSQSGICHSWSDDGRCISLLKILLSNDCCYNCAYCVNRATNPVE
RASFTAREVVDLTLDFYRRNYIEGLFLSSAVMQSPDATMERMVAVAETLRSEERFGGYIHLKIIPGASSELVRKAGLYAD
RISVNIELPSQVSLERLAPQKHRAAILEPMALIGREINTSLVERQHSHRAPRFAPAGQSTQMIIGATPESDFQILRLSQG
LYKKMNLKRVYYSAYVPVSEDNRLPVLAAPPLLREHRLYQADWLLRFYGFSAEEILSEELPHLDEQFDPKTAWALRHPEF
FPVDINRADYATLLRVPGIGVTSAKRIVAARRFSLITFEGLKKIGVVIKRARYFITMQGRRVECTDFSPTLIRRQLLLSE
STEKPASRQLVLPGLEPILA
>Mature_420_residues
MDTLTKLRILSGAARYDASCASSGSNRSGASCGIGNTSQSGICHSWSDDGRCISLLKILLSNDCCYNCAYCVNRATNPVE
RASFTAREVVDLTLDFYRRNYIEGLFLSSAVMQSPDATMERMVAVAETLRSEERFGGYIHLKIIPGASSELVRKAGLYAD
RISVNIELPSQVSLERLAPQKHRAAILEPMALIGREINTSLVERQHSHRAPRFAPAGQSTQMIIGATPESDFQILRLSQG
LYKKMNLKRVYYSAYVPVSEDNRLPVLAAPPLLREHRLYQADWLLRFYGFSAEEILSEELPHLDEQFDPKTAWALRHPEF
FPVDINRADYATLLRVPGIGVTSAKRIVAARRFSLITFEGLKKIGVVIKRARYFITMQGRRVECTDFSPTLIRRQLLLSE
STEKPASRQLVLPGLEPILA

Specific function: Unknown

COG id: COG4277

COG function: function code R; Predicted DNA-binding protein with the Helix-hairpin-helix motif

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47017; Mature: 47017

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLTKLRILSGAARYDASCASSGSNRSGASCGIGNTSQSGICHSWSDDGRCISLLKILL
CCCHHHHHHHHCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHH
SNDCCYNCAYCVNRATNPVERASFTAREVVDLTLDFYRRNYIEGLFLSSAVMQSPDATME
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RMVAVAETLRSEERFGGYIHLKIIPGASSELVRKAGLYADRISVNIELPSQVSLERLAPQ
HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCEEEEEEEEEECCCCHHHHHHCCH
KHRAAILEPMALIGREINTSLVERQHSHRAPRFAPAGQSTQMIIGATPESDFQILRLSQG
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
LYKKMNLKRVYYSAYVPVSEDNRLPVLAAPPLLREHRLYQADWLLRFYGFSAEEILSEEL
HHHHHCCEEEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
PHLDEQFDPKTAWALRHPEFFPVDINRADYATLLRVPGIGVTSAKRIVAARRFSLITFEG
CCCCHHCCCCCEEEECCCCEEEEECCCCCHHHHEECCCCCCHHHHHHHHHHHHHEEEHHH
LKKIGVVIKRARYFITMQGRRVECTDFSPTLIRRQLLLSESTEKPASRQLVLPGLEPILA
HHHHHHHHHHCEEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCCCCCEEECCCCHHHCC
>Mature Secondary Structure
MDTLTKLRILSGAARYDASCASSGSNRSGASCGIGNTSQSGICHSWSDDGRCISLLKILL
CCCHHHHHHHHCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHH
SNDCCYNCAYCVNRATNPVERASFTAREVVDLTLDFYRRNYIEGLFLSSAVMQSPDATME
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RMVAVAETLRSEERFGGYIHLKIIPGASSELVRKAGLYADRISVNIELPSQVSLERLAPQ
HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCEEEEEEEEEECCCCHHHHHHCCH
KHRAAILEPMALIGREINTSLVERQHSHRAPRFAPAGQSTQMIIGATPESDFQILRLSQG
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
LYKKMNLKRVYYSAYVPVSEDNRLPVLAAPPLLREHRLYQADWLLRFYGFSAEEILSEEL
HHHHHCCEEEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
PHLDEQFDPKTAWALRHPEFFPVDINRADYATLLRVPGIGVTSAKRIVAARRFSLITFEG
CCCCHHCCCCCEEEECCCCEEEEECCCCCHHHHEECCCCCCHHHHHHHHHHHHHEEEHHH
LKKIGVVIKRARYFITMQGRRVECTDFSPTLIRRQLLLSESTEKPASRQLVLPGLEPILA
HHHHHHHHHHCEEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCCCCCEEECCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA