Click here to switch to the map view.

The map label for this gene is ybbC [H]

Identifier: 78189359

GI number: 78189359

Start: 1858973

End: 1860166

Strand: Reverse

Name: ybbC [H]

Synonym: Cag_1396

Alternate gene names: 78189359

Gene position: 1860166-1858973 (Counterclockwise)

Preceding gene: 78189360

Following gene: 78189346

Centisome position: 72.32

GC content: 48.58

Gene sequence:

>1194_bases
ATGCAATTATTTTTTTTGCTGTTGTTTTTGTTGCCATCCATTGCGTTTGGAAAGCAACCACTGCAATGTGGTATTGATCG
TTTAGACGCTTCACAATTTCGAGAGTTGGCAGGATTGCGGGTGGGGCTTATTACGAATGCGGCAGCATTAACGCAACGTG
GCGAGCAAAATTATAAAGCTATGCAGCGCTGTGGCGTTAATCTACGTTTTTTAATGGCGCCTGAGCATGGTTTAGCTGCA
AATGTGGAAGCTGGCAAAAAGGTTGGGCACAGCGTGTCGGCTGATTCATTGCCTGTTTATTCGCTTTATGGTGCAACGCG
TAAACCTGAGCAGCGCCATCTTCACGACATTGATCTCTTGCTTTTTGATTTGCAAGATGTGGGTGTGCGTTGCTATACCT
ACATTTCTACCATGAAACTTGCAATGGAAGCGTGCGCTGAAGCGGGCATTCCTTTTATGGTGCTTGATCGCCCCAATCCT
ATTGCGCCGCTTCAGCCGCAAGGTTTTATGTTACAAGCGGGTTATGAATCGTTTGTGGGATTGGTATCGGTGCCTTTTGT
GCATGGCATGAGCGTTGGTGAAATAGCGCTCCTTTTGCAGCGTGCGCACTATCCCAACCTCGATGTGCGCATTATTACCA
TGACGGGATATCAGCCGCACTGCTTTGGCGATGAGCTTGAGGGCTTTACGTTTCGCTCTCCCTCACCCAACATTCGAGAT
GTTGCAACAGCGCTGCTTTATCCTGCAACGGTGCTGCTGGAGGCAACAACGGTAAGCGAAGGGCGTGGCACTCAAGCGCC
ATTTCAGCAATTTGGAGCGCCTTTTATTAAGAGCAATGAATTGTTGCAAGCGTTAGAACGCTACCATCTTGCTGGTGTGA
AGTTGCGAGCCGTGCGCTTTACGCCAACAGCAAGTAAGTGGAAGGGTGAAGAGTGCAAAGGTATTGGCATAACGGTTACT
AACCGTCGCTCTTTTAGCCCTTTTGCTATGAGCGTAGCGCTGTTGCGGGAATTGCAACGGCTTTATCCCGCACAACTTGG
TTTGGATATAAAGCGCAATGCAACTTTTTTTGATCGGCTTGCTGGTACGCCACGGTTACGAGAGCTGATTGTGCAACAAG
CATCATTACAAGATATTCTTGCTGAGAGCGAGCGCGAGGTTGCTCGTTTTCGGGCGGTGAGGTTGTATAGGTGA

Upstream 100 bases:

>100_bases
AGCTTTCATTTGAGTTGCTTGATAACCCTTTTTATTTATAGCAGTGAACCAATATTCTTTCTGTTATATAAAAGAGAAGT
TGGTAGCATTGCAACGTTTC

Downstream 100 bases:

>100_bases
TAGATTTTGGGGGGAAATGAAATGAGCGTCAGCACAATAGAGACGCTCATTTTTAGGTAGATTTATTCGCTTTCCTTCTC
AACGCGTTTTTTAGGCTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MQLFFLLLFLLPSIAFGKQPLQCGIDRLDASQFRELAGLRVGLITNAAALTQRGEQNYKAMQRCGVNLRFLMAPEHGLAA
NVEAGKKVGHSVSADSLPVYSLYGATRKPEQRHLHDIDLLLFDLQDVGVRCYTYISTMKLAMEACAEAGIPFMVLDRPNP
IAPLQPQGFMLQAGYESFVGLVSVPFVHGMSVGEIALLLQRAHYPNLDVRIITMTGYQPHCFGDELEGFTFRSPSPNIRD
VATALLYPATVLLEATTVSEGRGTQAPFQQFGAPFIKSNELLQALERYHLAGVKLRAVRFTPTASKWKGEECKGIGITVT
NRRSFSPFAMSVALLRELQRLYPAQLGLDIKRNATFFDRLAGTPRLRELIVQQASLQDILAESEREVARFRAVRLYR

Sequences:

>Translated_397_residues
MQLFFLLLFLLPSIAFGKQPLQCGIDRLDASQFRELAGLRVGLITNAAALTQRGEQNYKAMQRCGVNLRFLMAPEHGLAA
NVEAGKKVGHSVSADSLPVYSLYGATRKPEQRHLHDIDLLLFDLQDVGVRCYTYISTMKLAMEACAEAGIPFMVLDRPNP
IAPLQPQGFMLQAGYESFVGLVSVPFVHGMSVGEIALLLQRAHYPNLDVRIITMTGYQPHCFGDELEGFTFRSPSPNIRD
VATALLYPATVLLEATTVSEGRGTQAPFQQFGAPFIKSNELLQALERYHLAGVKLRAVRFTPTASKWKGEECKGIGITVT
NRRSFSPFAMSVALLRELQRLYPAQLGLDIKRNATFFDRLAGTPRLRELIVQQASLQDILAESEREVARFRAVRLYR
>Mature_397_residues
MQLFFLLLFLLPSIAFGKQPLQCGIDRLDASQFRELAGLRVGLITNAAALTQRGEQNYKAMQRCGVNLRFLMAPEHGLAA
NVEAGKKVGHSVSADSLPVYSLYGATRKPEQRHLHDIDLLLFDLQDVGVRCYTYISTMKLAMEACAEAGIPFMVLDRPNP
IAPLQPQGFMLQAGYESFVGLVSVPFVHGMSVGEIALLLQRAHYPNLDVRIITMTGYQPHCFGDELEGFTFRSPSPNIRD
VATALLYPATVLLEATTVSEGRGTQAPFQQFGAPFIKSNELLQALERYHLAGVKLRAVRFTPTASKWKGEECKGIGITVT
NRRSFSPFAMSVALLRELQRLYPAQLGLDIKRNATFFDRLAGTPRLRELIVQQASLQDILAESEREVARFRAVRLYR

Specific function: Unknown

COG id: COG3876

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008302 [H]

Pfam domain/function: PF07075 DUF1343 [H]

EC number: NA

Molecular weight: Translated: 44192; Mature: 44192

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLFFLLLFLLPSIAFGKQPLQCGIDRLDASQFRELAGLRVGLITNAAALTQRGEQNYKA
CHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCEEHHHHHHHHHHHCCCHHHHH
MQRCGVNLRFLMAPEHGLAANVEAGKKVGHSVSADSLPVYSLYGATRKPEQRHLHDIDLL
HHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHH
LFDLQDVGVRCYTYISTMKLAMEACAEAGIPFMVLDRPNPIAPLQPQGFMLQAGYESFVG
EEEHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCHHHHHH
LVSVPFVHGMSVGEIALLLQRAHYPNLDVRIITMTGYQPHCFGDELEGFTFRSPSPNIRD
HHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCHHH
VATALLYPATVLLEATTVSEGRGTQAPFQQFGAPFIKSNELLQALERYHLAGVKLRAVRF
HHHHHHHHHHHEEEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCEEEEEEEE
TPTASKWKGEECKGIGITVTNRRSFSPFAMSVALLRELQRLYPAQLGLDIKRNATFFDRL
CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHH
AGTPRLRELIVQQASLQDILAESEREVARFRAVRLYR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQLFFLLLFLLPSIAFGKQPLQCGIDRLDASQFRELAGLRVGLITNAAALTQRGEQNYKA
CHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCEEHHHHHHHHHHHCCCHHHHH
MQRCGVNLRFLMAPEHGLAANVEAGKKVGHSVSADSLPVYSLYGATRKPEQRHLHDIDLL
HHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHH
LFDLQDVGVRCYTYISTMKLAMEACAEAGIPFMVLDRPNPIAPLQPQGFMLQAGYESFVG
EEEHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCHHHHHH
LVSVPFVHGMSVGEIALLLQRAHYPNLDVRIITMTGYQPHCFGDELEGFTFRSPSPNIRD
HHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCHHH
VATALLYPATVLLEATTVSEGRGTQAPFQQFGAPFIKSNELLQALERYHLAGVKLRAVRF
HHHHHHHHHHHEEEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCEEEEEEEE
TPTASKWKGEECKGIGITVTNRRSFSPFAMSVALLRELQRLYPAQLGLDIKRNATFFDRL
CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHH
AGTPRLRELIVQQASLQDILAESEREVARFRAVRLYR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]