| Definition | Chlorobium chlorochromatii CaD3 chromosome, complete genome. |
|---|---|
| Accession | NC_007514 |
| Length | 2,572,079 |
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The map label for this gene is comEC [H]
Identifier: 78189074
GI number: 78189074
Start: 1493593
End: 1495860
Strand: Reverse
Name: comEC [H]
Synonym: Cag_1107
Alternate gene names: 78189074
Gene position: 1495860-1493593 (Counterclockwise)
Preceding gene: 78189076
Following gene: 78189060
Centisome position: 58.16
GC content: 46.52
Gene sequence:
>2268_bases ATGACAGAGCCATCAAAGCCCCATAGTGCCGTAAAACCAAAGCGAGCAATAGGTTTATCGTTGGCACCTTATCCCGCTGT GCGGTTGCTTTTTTTTGTCATTATAGGAATTGTTGTAGGGGTTGTTGCACCTTTTTCGCTCACGGAGTGGCTATGGAGCG TAGCGTTATCATTTGCGCTGTTGTTGCTTACATGGCTTTATGAGCGAATTCGTTATCACCAAGCGGCTGTACCGCATTTT GGCATGGCGATAATGTATTGTTTCGTTGTGGTTTCGGTGTTTGCAACGCTCAGTGCTTACCGATTGCACTATGCACCACG TAACGGTTTAACGCAATATGCTGGGCGCACCGTGATTCTTTATGGCTCCATTGAAAGCCGTCCCGAACGTTCTAAAGGTG GTGCAAGTTGGGTTATGGAGGTGCAAGAGCTTTTTGAACATGGCAAAACCGTTACGCTTCGCGACCGCACGAAAGTATTT ATGCGCATGAGTGCCGATGCTCATCTTGCTGTTCAAAAAGGCGATATGGTTCGCGTAAAAGGCAAGCTTGATTTGTTGCC CGAAGCTGCTAATGCAGGGGAGTTTAATCCTCGCCATTACGGGGCTATGCAACAAATCTCTGTGCAGCTTTATGCTGCCG GTCCATGGCAGGTGCTCTATGAGGGTGAAAAGCGCTTACATCCATTCGAGCAATATATGGTGCAACCAACCTATCGCTAC ATTATGCAGGCGCTTGCCGCACTTCTGCCCGATGGCGAGGAGCGTAAGTTAGCCGCAGGCGTGCTTACGGGTGAGCGCGA AACCATGTCGGAAGAGGTGTTTGAAGCTTTTAAGCGCACAGGTACAGCACATATTTTAGCCGTCTCAGGCATGAATGTTG GCTTGTTGGCATTAATTATTCAAGTATTTTTGCAACGGCTTAAAATTACGCCATTTGGGCGTTGGACGGCGTTTTTGCTC TTTGTTTTTTTGTTGATACTCTATAGCAATGTTACGGGGAATTCAGCCTCAGTAACGCGTGCGGCATTTATGGCGTTAGT ATTGATTGCTGGAGAAACTGTTGGGCAAAAAACATATCCGCTGAATTCCTTAGCCGTTGCTGACTTGATTATTTTGCTTA TTAATCCGCTTGATCTCCTGAACCCAGGTTTTTTAATGACCAATGGCGCCGTTTTAGCGCTTTTTCTTGTTTATCCGCTT CTCCATTTTCCACGCCCTAAAAATCGAACCCTTCTTTTATCAATAGTGTGGTTTCTGCTTGATAGCATCATTATTACCCT TGCCGCAAGCATTGGCGTTTCACCCGTAATTGCCTACTACTTTGGCACCTTTTCGCTTATTAGCTTTGTTGCAAACATTC CTGTTGTCTTTTTTTCTACCTTGCTGATGTATGCCTTAGTGCCAATGTTGGTTGTGTATGGGTTGTCGCAAGCTCTTGCC TCCGTTTTTGCCGCAGGCGCTTTTTGGCTTGCCCGCATGACATTGCAATCGGCATTGTGGTTTAGCAATTTCTCTTTTGC TTCAATTCCCTTAAAACTTGATGCGGTAGAGGTGTGGCTTTATTACATAGTGCTTGCAGCGGTGCTCTTGCTGGCAACAC GTAAAGCGTGGAGCCGTGTTGCCATAACGTTTTTGTTGGGAGTAAATCTTTTTGTGTGGTACTCCTTGCTTTTTCGTCCA AATCCAATAGCACCAACACTGCTTACTGTTAACTTAGGTCGGAATCTTGCAACAATTGTTTCCAATGGCAGCGAAAGTGT GCTTATTGATGTTGGCAAGAAACCCAAAGATTATCAACGCATTAGCGCCCAATTTGAGCGTTTTGGCATTGTAGAGCCCA CTGCCGTTGTACAATTTTATTCACCCGACTCGTTGATTTTGGCAACGCCAACTCGCCACCATTTTTTACGGAGCGATAGT CTGCTGCGGCTTTCTTCCATGGTTATTACGCGACCCGACGAAAAAATGGTAAAGCTTTGGAGCCGCAACCAAAGCTATTT TCTTGCTTCAGGCACCAGCCGTTTAAAAGCGGGGGAGCCCTATTGTGGCGATGTGGCTTGTATTTGGATTTATCGCTTTG GCGAAAAGCAGCGCATTGAGTTGGAACGGTGGCTTACCGCAACAAAGCCAAAAGAGGCTCTTTTGGTGCCAAGCTCATTT TTATCGCGCGTGCAGCTTGTGGCATTGCACCGTTTTGCAGCGGCTTATCCTCATGTTGAGGTGCGTAGTAAAACTAAGCA GGTGGTGGTGAATGGGGGAGAGAGGTAA
Upstream 100 bases:
>100_bases TAAGGCGATGCCTTGTCCGTTTTTTTTGGATCATAAAGTTTTTGAAGACATGTAAAAGCAAAAGCGTTTAATTTATTTTA AAATTATAGATATCTCTTTT
Downstream 100 bases:
>100_bases TAGCTTTTTGAAACCGCTATTCAGCCATTCATGGTTGCTTGATAGGTCAACGTAATACTGTCGAGAGCGCGTTGGTAAAG GTAGCTTTCTGGTGCAGCTA
Product: ComEC/Rec2-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 755; Mature: 754
Protein sequence:
>755_residues MTEPSKPHSAVKPKRAIGLSLAPYPAVRLLFFVIIGIVVGVVAPFSLTEWLWSVALSFALLLLTWLYERIRYHQAAVPHF GMAIMYCFVVVSVFATLSAYRLHYAPRNGLTQYAGRTVILYGSIESRPERSKGGASWVMEVQELFEHGKTVTLRDRTKVF MRMSADAHLAVQKGDMVRVKGKLDLLPEAANAGEFNPRHYGAMQQISVQLYAAGPWQVLYEGEKRLHPFEQYMVQPTYRY IMQALAALLPDGEERKLAAGVLTGERETMSEEVFEAFKRTGTAHILAVSGMNVGLLALIIQVFLQRLKITPFGRWTAFLL FVFLLILYSNVTGNSASVTRAAFMALVLIAGETVGQKTYPLNSLAVADLIILLINPLDLLNPGFLMTNGAVLALFLVYPL LHFPRPKNRTLLLSIVWFLLDSIIITLAASIGVSPVIAYYFGTFSLISFVANIPVVFFSTLLMYALVPMLVVYGLSQALA SVFAAGAFWLARMTLQSALWFSNFSFASIPLKLDAVEVWLYYIVLAAVLLLATRKAWSRVAITFLLGVNLFVWYSLLFRP NPIAPTLLTVNLGRNLATIVSNGSESVLIDVGKKPKDYQRISAQFERFGIVEPTAVVQFYSPDSLILATPTRHHFLRSDS LLRLSSMVITRPDEKMVKLWSRNQSYFLASGTSRLKAGEPYCGDVACIWIYRFGEKQRIELERWLTATKPKEALLVPSSF LSRVQLVALHRFAAAYPHVEVRSKTKQVVVNGGER
Sequences:
>Translated_755_residues MTEPSKPHSAVKPKRAIGLSLAPYPAVRLLFFVIIGIVVGVVAPFSLTEWLWSVALSFALLLLTWLYERIRYHQAAVPHF GMAIMYCFVVVSVFATLSAYRLHYAPRNGLTQYAGRTVILYGSIESRPERSKGGASWVMEVQELFEHGKTVTLRDRTKVF MRMSADAHLAVQKGDMVRVKGKLDLLPEAANAGEFNPRHYGAMQQISVQLYAAGPWQVLYEGEKRLHPFEQYMVQPTYRY IMQALAALLPDGEERKLAAGVLTGERETMSEEVFEAFKRTGTAHILAVSGMNVGLLALIIQVFLQRLKITPFGRWTAFLL FVFLLILYSNVTGNSASVTRAAFMALVLIAGETVGQKTYPLNSLAVADLIILLINPLDLLNPGFLMTNGAVLALFLVYPL LHFPRPKNRTLLLSIVWFLLDSIIITLAASIGVSPVIAYYFGTFSLISFVANIPVVFFSTLLMYALVPMLVVYGLSQALA SVFAAGAFWLARMTLQSALWFSNFSFASIPLKLDAVEVWLYYIVLAAVLLLATRKAWSRVAITFLLGVNLFVWYSLLFRP NPIAPTLLTVNLGRNLATIVSNGSESVLIDVGKKPKDYQRISAQFERFGIVEPTAVVQFYSPDSLILATPTRHHFLRSDS LLRLSSMVITRPDEKMVKLWSRNQSYFLASGTSRLKAGEPYCGDVACIWIYRFGEKQRIELERWLTATKPKEALLVPSSF LSRVQLVALHRFAAAYPHVEVRSKTKQVVVNGGER >Mature_754_residues TEPSKPHSAVKPKRAIGLSLAPYPAVRLLFFVIIGIVVGVVAPFSLTEWLWSVALSFALLLLTWLYERIRYHQAAVPHFG MAIMYCFVVVSVFATLSAYRLHYAPRNGLTQYAGRTVILYGSIESRPERSKGGASWVMEVQELFEHGKTVTLRDRTKVFM RMSADAHLAVQKGDMVRVKGKLDLLPEAANAGEFNPRHYGAMQQISVQLYAAGPWQVLYEGEKRLHPFEQYMVQPTYRYI MQALAALLPDGEERKLAAGVLTGERETMSEEVFEAFKRTGTAHILAVSGMNVGLLALIIQVFLQRLKITPFGRWTAFLLF VFLLILYSNVTGNSASVTRAAFMALVLIAGETVGQKTYPLNSLAVADLIILLINPLDLLNPGFLMTNGAVLALFLVYPLL HFPRPKNRTLLLSIVWFLLDSIIITLAASIGVSPVIAYYFGTFSLISFVANIPVVFFSTLLMYALVPMLVVYGLSQALAS VFAAGAFWLARMTLQSALWFSNFSFASIPLKLDAVEVWLYYIVLAAVLLLATRKAWSRVAITFLLGVNLFVWYSLLFRPN PIAPTLLTVNLGRNLATIVSNGSESVLIDVGKKPKDYQRISAQFERFGIVEPTAVVQFYSPDSLILATPTRHHFLRSDSL LRLSSMVITRPDEKMVKLWSRNQSYFLASGTSRLKAGEPYCGDVACIWIYRFGEKQRIELERWLTATKPKEALLVPSSFL SRVQLVALHRFAAAYPHVEVRSKTKQVVVNGGER
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=545, Percent_Identity=22.0183486238532, Blast_Score=81, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 84345; Mature: 84214
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEPSKPHSAVKPKRAIGLSLAPYPAVRLLFFVIIGIVVGVVAPFSLTEWLWSVALSFAL CCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LLLTWLYERIRYHQAAVPHFGMAIMYCFVVVSVFATLSAYRLHYAPRNGLTQYAGRTVIL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHCCCEEEE YGSIESRPERSKGGASWVMEVQELFEHGKTVTLRDRTKVFMRMSADAHLAVQKGDMVRVK EECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHEECCCCEEEEECCCEEEEE GKLDLLPEAANAGEFNPRHYGAMQQISVQLYAAGPWQVLYEGEKRLHPFEQYMVQPTYRY CCEECCCCCCCCCCCCCHHHCCHHEEEEEEEECCCHHEEECCCHHCCHHHHHHHCHHHHH IMQALAALLPDGEERKLAAGVLTGERETMSEEVFEAFKRTGTAHILAVSGMNVGLLALII HHHHHHHHCCCCCCCHHHHHEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH QVFLQRLKITPFGRWTAFLLFVFLLILYSNVTGNSASVTRAAFMALVLIAGETVGQKTYP HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC LNSLAVADLIILLINPLDLLNPGFLMTNGAVLALFLVYPLLHFPRPKNRTLLLSIVWFLL CHHHHHHHHHHHHHCCHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH DSIIITLAASIGVSPVIAYYFGTFSLISFVANIPVVFFSTLLMYALVPMLVVYGLSQALA HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH SVFAAGAFWLARMTLQSALWFSNFSFASIPLKLDAVEVWLYYIVLAAVLLLATRKAWSRV HHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH AITFLLGVNLFVWYSLLFRPNPIAPTLLTVNLGRNLATIVSNGSESVLIDVGKKPKDYQR HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCEEEEECCCCCHHHHH ISAQFERFGIVEPTAVVQFYSPDSLILATPTRHHFLRSDSLLRLSSMVITRPDEKMVKLW HHHHHHHCCCCCCHHEEEEECCCCEEEECCCHHHHHCCCCHHHHHHHHEECCHHHHHHHH SRNQSYFLASGTSRLKAGEPYCGDVACIWIYRFGEKQRIELERWLTATKPKEALLVPSSF HCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHH LSRVQLVALHRFAAAYPHVEVRSKTKQVVVNGGER HHHHHHHHHHHHHHHCCCHHHHCCCCEEEECCCCC >Mature Secondary Structure TEPSKPHSAVKPKRAIGLSLAPYPAVRLLFFVIIGIVVGVVAPFSLTEWLWSVALSFAL CCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LLLTWLYERIRYHQAAVPHFGMAIMYCFVVVSVFATLSAYRLHYAPRNGLTQYAGRTVIL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHCCCEEEE YGSIESRPERSKGGASWVMEVQELFEHGKTVTLRDRTKVFMRMSADAHLAVQKGDMVRVK EECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHEECCCCEEEEECCCEEEEE GKLDLLPEAANAGEFNPRHYGAMQQISVQLYAAGPWQVLYEGEKRLHPFEQYMVQPTYRY CCEECCCCCCCCCCCCCHHHCCHHEEEEEEEECCCHHEEECCCHHCCHHHHHHHCHHHHH IMQALAALLPDGEERKLAAGVLTGERETMSEEVFEAFKRTGTAHILAVSGMNVGLLALII HHHHHHHHCCCCCCCHHHHHEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH QVFLQRLKITPFGRWTAFLLFVFLLILYSNVTGNSASVTRAAFMALVLIAGETVGQKTYP HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC LNSLAVADLIILLINPLDLLNPGFLMTNGAVLALFLVYPLLHFPRPKNRTLLLSIVWFLL CHHHHHHHHHHHHHCCHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH DSIIITLAASIGVSPVIAYYFGTFSLISFVANIPVVFFSTLLMYALVPMLVVYGLSQALA HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH SVFAAGAFWLARMTLQSALWFSNFSFASIPLKLDAVEVWLYYIVLAAVLLLATRKAWSRV HHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH AITFLLGVNLFVWYSLLFRPNPIAPTLLTVNLGRNLATIVSNGSESVLIDVGKKPKDYQR HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCEEEEECCCCCHHHHH ISAQFERFGIVEPTAVVQFYSPDSLILATPTRHHFLRSDSLLRLSSMVITRPDEKMVKLW HHHHHHHCCCCCCHHEEEEECCCCEEEECCCHHHHHCCCCHHHHHHHHEECCHHHHHHHH SRNQSYFLASGTSRLKAGEPYCGDVACIWIYRFGEKQRIELERWLTATKPKEALLVPSSF HCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHH LSRVQLVALHRFAAAYPHVEVRSKTKQVVVNGGER HHHHHHHHHHHHHHHCCCHHHHCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]