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The map label for this gene is ntrY [H]

Identifier: 78067941

GI number: 78067941

Start: 3638873

End: 3641287

Strand: Reverse

Name: ntrY [H]

Synonym: Bcep18194_A6472

Alternate gene names: 78067941

Gene position: 3641287-3638873 (Counterclockwise)

Preceding gene: 78067942

Following gene: 78067940

Centisome position: 98.57

GC content: 66.79

Gene sequence:

>2415_bases
GTGCTAAATAAAGTGCGCCGCGCGGCCAGCGGGAAGAGCCTCCTCGTTCGCGTGATCGTCTCGACTGTCGCGCTCACCGC
GCTGCTGCTGCTCGTGCTGCTCGCGGCCGCGAGCGCGAATACCGAATTCTTCGACCGCTACTACTCGTGGCTGTACGCGA
CGAACATCGTCGTCGCCCTCGTGTTCCTGCTCGTGGTGCTCGGGCTGATCGGGATGATCGTCGTGCGCCTGAGGAAGGGC
AAGTTCGGCACGCGGCTGCTCGCGAAGCTCGCGGTGTTCTTCGCACTCGTCGGCGTGGTGCCGGGCGGGATCATCTACAT
CGTGTCGTACCAGTTCGTGTCGCGCAGCATCGAGTCGTGGTTCGACGTGAACGTCGAGACGGCGCTGACGGCCGGCCTGA
ACCTCGGCCGCGGGATGCTCGATGCTTCGCTGTCCGATCTGCAGACGAAGGCGCGGCTGATGTCCGACCAGCTCGCGAGC
GTCGATGCGAACACGAACGGCACGACGCTCACGCTGCTGCGGCTGCGCGACCAGTTCGGCGTGCAGGACGCGACGATCGT
CGAGCCGAGCCGTGGCGGCTCGGGGGCGGCGCCCGACCTGCACATCGTCGCGCAGGCGTCTGGCAATTTCGCGGCGCTGA
TTCCGGACGACCTGCCGACGCCGCTGATGCTGAACCAGGCGCGTGAACACGGTGCGTACGCGGCGATCGAGGGTGAAGTC
GACGGTGACCCGCGCACACACGGCGCGAAGGGTGCGCTGCGGTTGCGCGTCGTGCGGCCGATTCCCGATGCGTCGACGTC
GCTGCTGCAGCCGGCCGAACGCTTCCTGCAGCTCACGCAGCCGGTGCCACCGACGCTTGCCCACAACGCGGACGCCGTGC
AGCGCGCGTATCGCGAGTACCAGGAAAAGTCGCTCGGCCGCACCGGGCTGCGCAAGATGTACATCGGCACGCTGACGCTC
GCGCTGTTCCTCGCGACCTTCATCGCGATGATGCTTGCGCTCGCGCTCGGCCAGCAGCTCGCGCGGCCGCTGTTCCTGCT
CGCGCAGGGCACGAAGGAGGTCGCGGAAGGCGACTACACGCCGAAGCGCGAGATCAAGACGCGCGACGAGCTCGGTTTCC
TCACGCAGTCGTTCAATGCGATGACGCGCCAGTTGTCCGAGGCGCGGCTCGCGGTCGAGAAGAATCGCGTCGCGCTAGAG
CATTCGAAGACGTATCTCGAAAGCATCCTCGCGAACCTGACCGCCGGCGTGTTCGTGCTCGACCGCCAGTTCCGGCTGAC
GACCGCCAATCGCGGCGCCGAGCGGATCTTCCGGCAGCCGTTCAACGCGCTGATCGGCACGACGCTCGACCGGATCGGCG
TGGCCGCCGGGTTCGGCGCGATGGTGCGCAAGGCGTTCGCCGATCGCGAGGCGGCGTCCGACGGCGGCAGCGGCGATCGC
GGCCACTGGCAGCAGCAGTTCGCGATCGAGGTGCCGGGCGAAGCCGATCCGCTGACTTTGCTCGTGCGCGGCACGCGCCT
CGTATCGACGGTCGAGGGGCAGGCCGAGGATCCGCAGACGTCCGGTTACGTCGTCGTGTTCGACGACATCTCCGACGTGA
TTTCCGCGCAGCGTTCGGTCGCATGGGGCGAGGTCGCTCGCCGGCTCGCGCACGAGATCAAGAATCCGCTGACGCCGATT
CAGCTGTCGGCGGAGCGGTTGCAGATGAAGCTGTCCGACAAGCTCGCACCGCCCGACGCCGATGTGCTCAAGCGCGGCGC
GACGATGATCGTCAACCAGGTGGCCGCGATGAAGCGGATGGTCGACGACTTCCGCGAATACGCGCGCACGCCGCCGGCCG
TGCTCTCGAACCTGCAGTTGAACGAACTCGCGAGCGAGGTGCTCGGGCTGTACGGTGTGGGCGAAGGCAAGAGCGCGATC
GTCGCCGAGCTCGCGCCGTCGCTGCCGGTGATACGCGGTGACGCGACGCAACTGCGCCAGGTGATTCACAACCTGCTGCA
GAATGCGCAGGATTCGGTCGCGGAGTCGGCGCATCCGCGTGTGTTGATCGAAACCAAGACAGTAGAATATGGCGATCCCG
ACGCCGAGGGCAAAACGCGCGTCGCGGTACGTCTTACCGTGTCCGACAACGGGCCCGGTTTTCCGGCGCGCATCCTGACC
CGCGCGTTCGAGCCTTATGTGACGACGAAGGCGAAGGGCACGGGTCTGGGGTTGGCCACGGTCAAGAAGATCGTCGATGA
GCACGGTGCGCGGATCGATCTGCGCAATCGCATGCACGGCGAGACCGTCGAGGGTGCGCAGGTGTCGATCCTGTTCCTGC
AGATGGCGAGCGATGCGCCAGGCGCCGAATCGGGCGTGCAGGACGGGGCGGCCCCCGCCAAGACAAAAGCAAGTGAGCAG
ACAAAGGCAGCGTAA

Upstream 100 bases:

>100_bases
ACGGCGCTGATGCCGAAGCCGTTCCAGGTCGATGCCGTGAACAACCGCGACTGGACGCTCGGGTCGGACTGGAAGCGCTT
CAACTTCACGGTGACCGAAC

Downstream 100 bases:

>100_bases
ATGGCAACCATCCTGGTGGTAGATGATGAAATGGGCATCCGGGAATTGCTCTCGGAGATCCTCAGCGATGAAGGACATGT
CGTCGAGGCGGCGGAGAACG

Product: multi-sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 804; Mature: 804

Protein sequence:

>804_residues
MLNKVRRAASGKSLLVRVIVSTVALTALLLLVLLAAASANTEFFDRYYSWLYATNIVVALVFLLVVLGLIGMIVVRLRKG
KFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSDQLAS
VDANTNGTTLTLLRLRDQFGVQDATIVEPSRGGSGAAPDLHIVAQASGNFAALIPDDLPTPLMLNQAREHGAYAAIEGEV
DGDPRTHGAKGALRLRVVRPIPDASTSLLQPAERFLQLTQPVPPTLAHNADAVQRAYREYQEKSLGRTGLRKMYIGTLTL
ALFLATFIAMMLALALGQQLARPLFLLAQGTKEVAEGDYTPKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALE
HSKTYLESILANLTAGVFVLDRQFRLTTANRGAERIFRQPFNALIGTTLDRIGVAAGFGAMVRKAFADREAASDGGSGDR
GHWQQQFAIEVPGEADPLTLLVRGTRLVSTVEGQAEDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPI
QLSAERLQMKLSDKLAPPDADVLKRGATMIVNQVAAMKRMVDDFREYARTPPAVLSNLQLNELASEVLGLYGVGEGKSAI
VAELAPSLPVIRGDATQLRQVIHNLLQNAQDSVAESAHPRVLIETKTVEYGDPDAEGKTRVAVRLTVSDNGPGFPARILT
RAFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGETVEGAQVSILFLQMASDAPGAESGVQDGAAPAKTKASEQ
TKAA

Sequences:

>Translated_804_residues
MLNKVRRAASGKSLLVRVIVSTVALTALLLLVLLAAASANTEFFDRYYSWLYATNIVVALVFLLVVLGLIGMIVVRLRKG
KFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSDQLAS
VDANTNGTTLTLLRLRDQFGVQDATIVEPSRGGSGAAPDLHIVAQASGNFAALIPDDLPTPLMLNQAREHGAYAAIEGEV
DGDPRTHGAKGALRLRVVRPIPDASTSLLQPAERFLQLTQPVPPTLAHNADAVQRAYREYQEKSLGRTGLRKMYIGTLTL
ALFLATFIAMMLALALGQQLARPLFLLAQGTKEVAEGDYTPKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALE
HSKTYLESILANLTAGVFVLDRQFRLTTANRGAERIFRQPFNALIGTTLDRIGVAAGFGAMVRKAFADREAASDGGSGDR
GHWQQQFAIEVPGEADPLTLLVRGTRLVSTVEGQAEDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPI
QLSAERLQMKLSDKLAPPDADVLKRGATMIVNQVAAMKRMVDDFREYARTPPAVLSNLQLNELASEVLGLYGVGEGKSAI
VAELAPSLPVIRGDATQLRQVIHNLLQNAQDSVAESAHPRVLIETKTVEYGDPDAEGKTRVAVRLTVSDNGPGFPARILT
RAFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGETVEGAQVSILFLQMASDAPGAESGVQDGAAPAKTKASEQ
TKAA
>Mature_804_residues
MLNKVRRAASGKSLLVRVIVSTVALTALLLLVLLAAASANTEFFDRYYSWLYATNIVVALVFLLVVLGLIGMIVVRLRKG
KFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSDQLAS
VDANTNGTTLTLLRLRDQFGVQDATIVEPSRGGSGAAPDLHIVAQASGNFAALIPDDLPTPLMLNQAREHGAYAAIEGEV
DGDPRTHGAKGALRLRVVRPIPDASTSLLQPAERFLQLTQPVPPTLAHNADAVQRAYREYQEKSLGRTGLRKMYIGTLTL
ALFLATFIAMMLALALGQQLARPLFLLAQGTKEVAEGDYTPKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALE
HSKTYLESILANLTAGVFVLDRQFRLTTANRGAERIFRQPFNALIGTTLDRIGVAAGFGAMVRKAFADREAASDGGSGDR
GHWQQQFAIEVPGEADPLTLLVRGTRLVSTVEGQAEDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPI
QLSAERLQMKLSDKLAPPDADVLKRGATMIVNQVAAMKRMVDDFREYARTPPAVLSNLQLNELASEVLGLYGVGEGKSAI
VAELAPSLPVIRGDATQLRQVIHNLLQNAQDSVAESAHPRVLIETKTVEYGDPDAEGKTRVAVRLTVSDNGPGFPARILT
RAFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGETVEGAQVSILFLQMASDAPGAESGVQDGAAPAKTKASEQ
TKAA

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=415, Percent_Identity=25.5421686746988, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1790300, Length=218, Percent_Identity=28.8990825688073, Blast_Score=88, Evalue=3e-18,
Organism=Escherichia coli, GI1790436, Length=220, Percent_Identity=30.4545454545455, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 86767; Mature: 86767

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKVRRAASGKSLLVRVIVSTVALTALLLLVLLAAASANTEFFDRYYSWLYATNIVVAL
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VFLLVVLGLIGMIVVRLRKGKFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESW
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHH
FDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSDQLASVDANTNGTTLTLLRLRDQFG
HCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHC
VQDATIVEPSRGGSGAAPDLHIVAQASGNFAALIPDDLPTPLMLNQAREHGAYAAIEGEV
CCCCEEECCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCHHHHHHHHCCCEEEEECCC
DGDPRTHGAKGALRLRVVRPIPDASTSLLQPAERFLQLTQPVPPTLAHNADAVQRAYREY
CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHH
QEKSLGRTGLRKMYIGTLTLALFLATFIAMMLALALGQQLARPLFLLAQGTKEVAEGDYT
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
PKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALEHSKTYLESILANLTAGVFVL
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEE
DRQFRLTTANRGAERIFRQPFNALIGTTLDRIGVAAGFGAMVRKAFADREAASDGGSGDR
ECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GHWQQQFAIEVPGEADPLTLLVRGTRLVSTVEGQAEDPQTSGYVVVFDDISDVISAQRSV
CCCCCEEEEECCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHH
AWGEVARRLAHEIKNPLTPIQLSAERLQMKLSDKLAPPDADVLKRGATMIVNQVAAMKRM
HHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHH
VDDFREYARTPPAVLSNLQLNELASEVLGLYGVGEGKSAIVAELAPSLPVIRGDATQLRQ
HHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEECCHHHHHH
VIHNLLQNAQDSVAESAHPRVLIETKTVEYGDPDAEGKTRVAVRLTVSDNGPGFPARILT
HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHH
RAFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGETVEGAQVSILFLQMASDAP
HHHCCCEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCC
GAESGVQDGAAPAKTKASEQTKAA
CCCCCCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MLNKVRRAASGKSLLVRVIVSTVALTALLLLVLLAAASANTEFFDRYYSWLYATNIVVAL
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VFLLVVLGLIGMIVVRLRKGKFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESW
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHH
FDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSDQLASVDANTNGTTLTLLRLRDQFG
HCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHC
VQDATIVEPSRGGSGAAPDLHIVAQASGNFAALIPDDLPTPLMLNQAREHGAYAAIEGEV
CCCCEEECCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCHHHHHHHHCCCEEEEECCC
DGDPRTHGAKGALRLRVVRPIPDASTSLLQPAERFLQLTQPVPPTLAHNADAVQRAYREY
CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHH
QEKSLGRTGLRKMYIGTLTLALFLATFIAMMLALALGQQLARPLFLLAQGTKEVAEGDYT
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
PKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALEHSKTYLESILANLTAGVFVL
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEE
DRQFRLTTANRGAERIFRQPFNALIGTTLDRIGVAAGFGAMVRKAFADREAASDGGSGDR
ECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GHWQQQFAIEVPGEADPLTLLVRGTRLVSTVEGQAEDPQTSGYVVVFDDISDVISAQRSV
CCCCCEEEEECCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHH
AWGEVARRLAHEIKNPLTPIQLSAERLQMKLSDKLAPPDADVLKRGATMIVNQVAAMKRM
HHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHH
VDDFREYARTPPAVLSNLQLNELASEVLGLYGVGEGKSAIVAELAPSLPVIRGDATQLRQ
HHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEECCHHHHHH
VIHNLLQNAQDSVAESAHPRVLIETKTVEYGDPDAEGKTRVAVRLTVSDNGPGFPARILT
HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHH
RAFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGETVEGAQVSILFLQMASDAP
HHHCCCEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCC
GAESGVQDGAAPAKTKASEQTKAA
CCCCCCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]