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The map label for this gene is ltrA [H]

Identifier: 78067691

GI number: 78067691

Start: 3380219

End: 3381181

Strand: Direct

Name: ltrA [H]

Synonym: Bcep18194_A6222

Alternate gene names: 78067691

Gene position: 3380219-3381181 (Clockwise)

Preceding gene: 78067681

Following gene: 78067692

Centisome position: 91.5

GC content: 68.33

Gene sequence:

>963_bases
ATGGACCTGAACGCGCTGACGCTGCTCGTCGAGATCCTCGACGCCGGCAATCTCAGCAAGGCCGCGCAGCGGCTCAAGAT
GAGCCGCGCGAACGTCAGCTACCGGCTGAACCAGCTCGAGCGCTCGATCGGCCAGCAGCTCGTGCGGCGCACGACGCGGC
GCATCGAGCCGACCGAGATCGGGCTGAAGCTGTACGAGCACGGCCGGCGCATCCGCAACGAACTGCTGGCCGCGCAGGAA
TCGGTGACGACGCTCGGCCAGGACCTGCAGGGCCGCGTGCGGCTGTCGGTGCCGAGCGGCTACGGGCAGATGGTGATGTC
CGACTGGCTGCTTGCATTCAAGCGGCTGCATCCGGGCATCGTGCTCGACGTCGTGTTCGAGAACCGCGTGGAAGACCTGA
TGCGCGACGAGATCGACATCGCGGTGCGCGTGATGCCGGAGCCACCGCAGAACCTCGTCGCGCGCGACATGGGCGCGGTG
CGCTACGTCGCGTGCGCATCGGCCGCCTTCGCGGCCGAGCACGGGATGCCGGCGAGCCTCGGCGCGTTGTCGGCCTCCCC
CGTCGTGACCGCGACGGTCATGGGCCGGCAGCTCAGGATCGCCGCGTATCTCGGCGACGAGCGCCACGAGGTGCTGCTCG
AGCCCACGCTGATTTCGGAGAACTTCCTGTTCCTGCGGCAGGCGATCCTCGGCGGGATCGGCGTCGGCATCGTGCCCGAC
TACGTGATGCAGGACGACATCCGGCGCGGCACGGTCGTCACGTCGCTCGACGCGTACCGGCTCAGCATCTTCGGCACGCA
CATGTACATGCTCTACATGCCGAACCGGCACCACACGCGTGCGACCTCGACGTTCATAGAGTTCATCCTCGAACAGGCCG
GAAAGACCGGCCGGGGCGGGCCCGGCGCGATGCGTCAGGGTTTCCTGTCGGGTGACAAGCCGCCGGCCGCGCGGCGACAA
TAG

Upstream 100 bases:

>100_bases
GATTCATTGACAATTCCCTCCTGCTTTTACAAGCTGTCAAGTCTGACTTGACACTGAATGCTTCCGACCATTAAACGGGA
CGGATCAGGAGACGCGACGC

Downstream 100 bases:

>100_bases
CGCGCCCGGGGCGGGCAGCCGCGTTGCGCCGGCACCGTCGCCTCCTTCGAATTCACTGCTGCCGAGGGTTCAATGTTCGA
CCGGATTCGTCCGCATTCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEIGLKLYEHGRRIRNELLAAQE
SVTTLGQDLQGRVRLSVPSGYGQMVMSDWLLAFKRLHPGIVLDVVFENRVEDLMRDEIDIAVRVMPEPPQNLVARDMGAV
RYVACASAAFAAEHGMPASLGALSASPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILGGIGVGIVPD
YVMQDDIRRGTVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRGGPGAMRQGFLSGDKPPAARRQ

Sequences:

>Translated_320_residues
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEIGLKLYEHGRRIRNELLAAQE
SVTTLGQDLQGRVRLSVPSGYGQMVMSDWLLAFKRLHPGIVLDVVFENRVEDLMRDEIDIAVRVMPEPPQNLVARDMGAV
RYVACASAAFAAEHGMPASLGALSASPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILGGIGVGIVPD
YVMQDDIRRGTVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRGGPGAMRQGFLSGDKPPAARRQ
>Mature_320_residues
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEIGLKLYEHGRRIRNELLAAQE
SVTTLGQDLQGRVRLSVPSGYGQMVMSDWLLAFKRLHPGIVLDVVFENRVEDLMRDEIDIAVRVMPEPPQNLVARDMGAV
RYVACASAAFAAEHGMPASLGALSASPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILGGIGVGIVPD
YVMQDDIRRGTVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRGGPGAMRQGFLSGDKPPAARRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=25.3424657534247, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=27.0175438596491, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1789639, Length=259, Percent_Identity=23.5521235521236, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=23.6933797909408, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=24.9158249158249, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=21.7993079584775, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788297, Length=147, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35497; Mature: 35497

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEI
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GLKLYEHGRRIRNELLAAQESVTTLGQDLQGRVRLSVPSGYGQMVMSDWLLAFKRLHPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCE
VLDVVFENRVEDLMRDEIDIAVRVMPEPPQNLVARDMGAVRYVACASAAFAAEHGMPASL
EEEHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GALSASPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILGGIGVGIVPD
CCCCCCCHHHHHHCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCH
YVMQDDIRRGTVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRGG
HHHHHHCCCCCEEEECHHHEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
PGAMRQGFLSGDKPPAARRQ
CHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEI
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GLKLYEHGRRIRNELLAAQESVTTLGQDLQGRVRLSVPSGYGQMVMSDWLLAFKRLHPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCE
VLDVVFENRVEDLMRDEIDIAVRVMPEPPQNLVARDMGAVRYVACASAAFAAEHGMPASL
EEEHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GALSASPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILGGIGVGIVPD
CCCCCCCHHHHHHCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCH
YVMQDDIRRGTVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRGG
HHHHHHCCCCCEEEECHHHEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
PGAMRQGFLSGDKPPAARRQ
CHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]