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The map label for this gene is yfdE [H]

Identifier: 78067687

GI number: 78067687

Start: 3374212

End: 3375417

Strand: Reverse

Name: yfdE [H]

Synonym: Bcep18194_A6218

Alternate gene names: 78067687

Gene position: 3375417-3374212 (Counterclockwise)

Preceding gene: 78067688

Following gene: 78067686

Centisome position: 91.37

GC content: 70.73

Gene sequence:

>1206_bases
ATGACGAACGAATCGCGCGCATTGCCGCTGGCCGGCGTGAAGGTGCTCGATTTCTCGCGCGTGCTCGCGGGCCCGTGGTG
CGCGATGGTGCTCGCCGACTTCGGCGCGGAAGTGATCAAGGTCGAGCATCCGGCGCGCGGCGACGACACGCGCGACTGGG
GCCTGCGGATCGGCGACACCGAAACGACCTACTTCAACAGCGTGAACCGCAGCAAGCGCTCGATCTGTCTCGACCTGCAG
ACCGAAGCAGGGCAGCGGCTCGCACGCGAGCTGGCCGCGCAGGCCGACGTGGTGCTTCACAACTTCAAGTTCGGCGGCGC
GGAAAAGCTCGGGCTCGGCTACGACGCGCTGTCCGAGTTGAACCCGCGCCTCGTGCACTGCGCGATTTCCGGCTACGACC
GTTCGGGCGCCGAGGCCGCGCGGCCCGGCTACGACCTCGTCGTGCAGGGCGAGGCCGGGCTGATGGCGCTGAACGGCGAG
GCCGGCCAGCCGCCGCTGAAGTTCGGCGTCGCGGCGGTCGACCTGTTCACCGGCATGTATTCGGCGCAGGCGATCCTCGC
CGCGCTGTACGAGCGCCATGCGACGGGGCGCGGGCGGCGCATCGAGATGGCGCTGTTCGATTGCGGGCTGATGATCACCG
CGTACTACGGGCTCGACGCGCTGCTGATGGGCGAGGACCCGCCGCGCTACGGCAACGCGCATCCGTCGATCGTGCCGTAC
GGCGTGTTCGACGCGGCCGACGGCCCGCTCGTGATCACGGTCGGCAACAACACGCAGTTCGCGCGCTTTTGCGACGCGAT
CGAGCGGCCCGATCTCGCGGCCGACGCGCGCTACAAGACCAACCTCGGCCGTTCGGAAAACCGCGCTGAACTGCTGCCCG
AGATTCGCGGCGAACTCGCGCGCCGGTCGCGCGCGACGTTGCTCGCGGCGCTCGCCGATGCGGGCATTCCGTGCGGCGAA
GTGCTCGGGCTGCACGAAGCGCTGAAGTCGGAACGCGCGACGAGCGCGGGGCTCGTCACGCGGCAGCCGCATCCGGTCGC
GGGTGGCGTCGACGTGCTTGCGCCGCCGTATCGGTTCGACGGCGCGCGGCTGCCGGTGCGTGGTGCGCCGCCGGTGCTCG
GCGCCGATACGGATGCGGTGCTCGGCGGCTGGCTCGGGATGTCGGCCGACGAGGTCGCGCGGTTGCGGGCGGATCGCGTG
GTCTGA

Upstream 100 bases:

>100_bases
GATGATCGATCACCAGCTCGGCGACGAGGATCACCATCTCGCGCGCTACATCGCGCTGTCGAAACAGTAAAAGCAAATCA
CGCGAATGGAGGAGACAAGG

Downstream 100 bases:

>100_bases
ACGCAAGCCCACACACGGGCAGGACACATCGCATTGCACCGCCGCGGCGCGGGCGGATCGGTAGACGCGCCATCCATCCA
CAAGACACCCCTCGCAATGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MTNESRALPLAGVKVLDFSRVLAGPWCAMVLADFGAEVIKVEHPARGDDTRDWGLRIGDTETTYFNSVNRSKRSICLDLQ
TEAGQRLARELAAQADVVLHNFKFGGAEKLGLGYDALSELNPRLVHCAISGYDRSGAEAARPGYDLVVQGEAGLMALNGE
AGQPPLKFGVAAVDLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMGEDPPRYGNAHPSIVPY
GVFDAADGPLVITVGNNTQFARFCDAIERPDLAADARYKTNLGRSENRAELLPEIRGELARRSRATLLAALADAGIPCGE
VLGLHEALKSERATSAGLVTRQPHPVAGGVDVLAPPYRFDGARLPVRGAPPVLGADTDAVLGGWLGMSADEVARLRADRV
V

Sequences:

>Translated_401_residues
MTNESRALPLAGVKVLDFSRVLAGPWCAMVLADFGAEVIKVEHPARGDDTRDWGLRIGDTETTYFNSVNRSKRSICLDLQ
TEAGQRLARELAAQADVVLHNFKFGGAEKLGLGYDALSELNPRLVHCAISGYDRSGAEAARPGYDLVVQGEAGLMALNGE
AGQPPLKFGVAAVDLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMGEDPPRYGNAHPSIVPY
GVFDAADGPLVITVGNNTQFARFCDAIERPDLAADARYKTNLGRSENRAELLPEIRGELARRSRATLLAALADAGIPCGE
VLGLHEALKSERATSAGLVTRQPHPVAGGVDVLAPPYRFDGARLPVRGAPPVLGADTDAVLGGWLGMSADEVARLRADRV
V
>Mature_400_residues
TNESRALPLAGVKVLDFSRVLAGPWCAMVLADFGAEVIKVEHPARGDDTRDWGLRIGDTETTYFNSVNRSKRSICLDLQT
EAGQRLARELAAQADVVLHNFKFGGAEKLGLGYDALSELNPRLVHCAISGYDRSGAEAARPGYDLVVQGEAGLMALNGEA
GQPPLKFGVAAVDLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMGEDPPRYGNAHPSIVPYG
VFDAADGPLVITVGNNTQFARFCDAIERPDLAADARYKTNLGRSENRAELLPEIRGELARRSRATLLAALADAGIPCGEV
LGLHEALKSERATSAGLVTRQPHPVAGGVDVLAPPYRFDGARLPVRGAPPVLGADTDAVLGGWLGMSADEVARLRADRVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=373, Percent_Identity=37.8016085790885, Blast_Score=280, Evalue=1e-75,
Organism=Homo sapiens, GI300863124, Length=399, Percent_Identity=35.8395989974937, Blast_Score=270, Evalue=2e-72,
Organism=Homo sapiens, GI300863126, Length=373, Percent_Identity=34.5844504021448, Blast_Score=229, Evalue=4e-60,
Organism=Homo sapiens, GI13376042, Length=399, Percent_Identity=32.3308270676692, Blast_Score=223, Evalue=2e-58,
Organism=Homo sapiens, GI42794625, Length=402, Percent_Identity=25.8706467661692, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266456254, Length=402, Percent_Identity=25.8706467661692, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=30.7692307692308, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458393, Length=260, Percent_Identity=30.7692307692308, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI42822893, Length=140, Percent_Identity=37.8571428571429, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI266458395, Length=140, Percent_Identity=37.8571428571429, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI87082093, Length=365, Percent_Identity=33.4246575342466, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=30.9352517985612, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI1786222, Length=399, Percent_Identity=26.5664160401003, Blast_Score=97, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=206, Percent_Identity=29.126213592233, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=204, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=41.5189873417722, Blast_Score=307, Evalue=8e-84,
Organism=Drosophila melanogaster, GI24585488, Length=210, Percent_Identity=28.0952380952381, Blast_Score=100, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42810; Mature: 42679

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNESRALPLAGVKVLDFSRVLAGPWCAMVLADFGAEVIKVEHPARGDDTRDWGLRIGDT
CCCCCCCCCCCCEEEHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEECCC
ETTYFNSVNRSKRSICLDLQTEAGQRLARELAAQADVVLHNFKFGGAEKLGLGYDALSEL
CCHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHC
NPRLVHCAISGYDRSGAEAARPGYDLVVQGEAGLMALNGEAGQPPLKFGVAAVDLFTGMY
CCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
SAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMGEDPPRYGNAHPSIVPY
HHHHHHHHHHHHHCCCCCCEEEEEEHHCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEE
GVFDAADGPLVITVGNNTQFARFCDAIERPDLAADARYKTNLGRSENRAELLPEIRGELA
EEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
RRSRATLLAALADAGIPCGEVLGLHEALKSERATSAGLVTRQPHPVAGGVDVLAPPYRFD
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCC
GARLPVRGAPPVLGADTDAVLGGWLGMSADEVARLRADRVV
CCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TNESRALPLAGVKVLDFSRVLAGPWCAMVLADFGAEVIKVEHPARGDDTRDWGLRIGDT
CCCCCCCCCCCEEEHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEECCC
ETTYFNSVNRSKRSICLDLQTEAGQRLARELAAQADVVLHNFKFGGAEKLGLGYDALSEL
CCHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHC
NPRLVHCAISGYDRSGAEAARPGYDLVVQGEAGLMALNGEAGQPPLKFGVAAVDLFTGMY
CCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
SAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMGEDPPRYGNAHPSIVPY
HHHHHHHHHHHHHCCCCCCEEEEEEHHCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEE
GVFDAADGPLVITVGNNTQFARFCDAIERPDLAADARYKTNLGRSENRAELLPEIRGELA
EEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
RRSRATLLAALADAGIPCGEVLGLHEALKSERATSAGLVTRQPHPVAGGVDVLAPPYRFD
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCC
GARLPVRGAPPVLGADTDAVLGGWLGMSADEVARLRADRVV
CCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]